| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0564 |
|---|
| Symbol | |
|---|
| ID | 4689678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 594770 |
|---|
| End bp | 595945 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639833559 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_980805 |
|---|
| Protein GI | 121603476 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC TACTGACCTT TCCCGATGCA GGCAAACATG CCTTGTCCAT TCGCGCCAAG
GCACTGGTGT TTGAAGACCC GCAGTCCCAG GCCTTGCTCG CGCGCCTGGA CCAGGTGGCA
CCCACCGAGG CCACCGTCGT GATCATCGGT GAAACCGGCA CCGGCAAGGA GCTGCTGGCG
CGCCGCATTC ACCAGGGCAG CGCACGGCGC GGCCCCTTCG TGGCGGTCAA CTGCGGTGCG
TTCAGCGAAT CGCTGATCGA TGCGGAGCTG TTTGGCCACG AGAGCGGGGC CTTCACCGGC
GCCAGCCAGG CCCGGGCCGG CTGGTTCGAG GCGGCCAATG GCGGCAGCTT GTTTCTCGAT
GAAATTGGCG ACTTGCCGCT GGCGCTGCAG GTCAAGCTGC TGCGCGTGCT GCAAGAGCGC
CAGATCGTGC GCATCGGCTC GCGCAAGCCC ATCGAGCTGG ATGTGCGGCT GATTGCCGCC
ACCAACGTGG ACCTGCGCGA CGCGGTGAAC GCAGGCCACT TTCGTGCCGA CCTTTACTAC
CGGCTCAGCG TGGCGACGCT GGAGCTGCGT CCGCTGTGGG AGCGGCCGGG CGATATTCTT
CCGCTGGCCC GGCATTTTCT GGCCAGCTAC GCCAAACGCC TGGGGATTGA GGGCAGCACG
CTGACGCCGG GTGCCGAGCA GGCGCTGCTG GCGCATGACT GGCCGGGCAA TATCCGGGAG
CTGGAAAATG TCGTTCACTA CGCGCTGATT GTGGCCCCCG CAGCCGCCAT CCACGCGAGC
GACCTGCAGT CGATCCAGCG TTCGGCACGC AGCCGGGCGC GTCAGCCTGT GGCCTTGCCG
CCAGCGGTGG CGGACAGCAG CGCCAGCACG CCGGAAGTGG CTGCCGTCCC CACGCTGCGG
CAAATGCTGC GTGAACTGCT GCTCAAATCA ATGAAGCTCA ACCAGCCGTT GCTCTTTGAA
CAGGTGCAGG CAACGCTGGT TTGTACCGCT TTCGAGTTCT GCCACAACAA TCAGGTGCAG
ACCGCACGTC TGCTCGGCCT GTCGCGCAAT GTGCTGCGCA CCTTGCTCAA ACAGCATGGG
CTGCTGGCGG CGCATGAAGA CAGCAGCCCC GATACCGGCG ACTTTGCCGC AGACCTGCTC
GTCGGGCAGC CGGTTGCGGC TTCTTCCATG GCTTGA
|
|---|
| Protein sequence | MNQLLTFPDA GKHALSIRAK ALVFEDPQSQ ALLARLDQVA PTEATVVIIG ETGTGKELLA
RRIHQGSARR GPFVAVNCGA FSESLIDAEL FGHESGAFTG ASQARAGWFE AANGGSLFLD
EIGDLPLALQ VKLLRVLQER QIVRIGSRKP IELDVRLIAA TNVDLRDAVN AGHFRADLYY
RLSVATLELR PLWERPGDIL PLARHFLASY AKRLGIEGST LTPGAEQALL AHDWPGNIRE
LENVVHYALI VAPAAAIHAS DLQSIQRSAR SRARQPVALP PAVADSSAST PEVAAVPTLR
QMLRELLLKS MKLNQPLLFE QVQATLVCTA FEFCHNNQVQ TARLLGLSRN VLRTLLKQHG
LLAAHEDSSP DTGDFAADLL VGQPVAASSM A
|
|---|
| |