| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0317 |
|---|
| Symbol | |
|---|
| ID | 4686660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 318385 |
|---|
| End bp | 320175 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639833309 |
|---|
| Product | glycosyltransferase |
|---|
| Protein accession | YP_980561 |
|---|
| Protein GI | 121603232 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0947591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCC CCGAAAAATC GCCAGCCGCC CGCCTTCCGC ATCACCTGGT CTGGATAGGC
CTGGCCATTG CCGTGGCGCT GGGCTACCTG TTCGGCCTGG GCGGCGACCA CATTCCGCGC
AATGGCGACG AGCTGGTCTA TGCCAACATC GCCCGGCTGA CCGCCGCCAG CGGCCACTGG
CTGCCGTTGC ACAGCGCCTG GGACTTCATG CGCAACACCA AGCCGCCGCT GCTGTTCTGG
CAGGCCATGG TGGCCGGCGG CTGGGGCGAG CACTGGACGC TCCTGCGGCT GCGCCTGCCC
AGCGTGGCCT ACACCTGGGG CATTGCGCTG ATGGTGGGCC TGCTGACCTG GAAGACGGTT
CGCGGCGATG CAGGCGCAAC CTCCGGCAAT GCCGCCACGG CTGCGCAACG AAACCACCAC
GCGATGACCA TGGGCGCCAT CGCGGTCCTC GTTTACCTGT CGTTTTTCAC GACCTACCGC
TACGGCCGCC CTTACCTGAC CAGCGCACCG GAAACCTTCT GGCTGTTCGG CGTGTTCTTT
GCCATCGCCT GGTCGCCGGC CAGGCTGCTC GCGTCCAGCT GGAAGTTCCC GCTGATCGCC
GGCCTGGCCA TCGGCATCGG CTGCCTGTAC AAATCGTTCG TCATGGTGGC GCCGGTCGGC
TTCGCGCTGG CGCTGTGCTA CCAGGCGGTG GGCGCCCGGC TGGCGCCCTG GAAGCTTGCG
CGGCCCGGCA TCGTGGCCGA CGGCGTCAAG GTTCTGGCCA TCTGCGCCCT TGGACTGGCG
GTTTTCGGCC TGTGGTTCGC CATCGACCCG CAGCCGGGCG AGGTCTGGCG CGAATTCGTC
GTCGGCGAGA ACGCCGGCAA GATGAACTCC TCCAAGGGTT ATTTCCAGAC CGCCTTCAGC
GGCAGCAGCG GCATCCTGAC GATTTTGACG GGCTACTTCT CCAATGCCCT GTTCCTGCTG
CCGCTCTCGG TCGGTTGCTT CGTGGCGGCC TGGCGCAGCT GGCGGCAGCG CCAGGGCACG
GCGCAAACCA TCAGCGACGC CGAAAAAATC ATGTGGCTCT GGCTGCTGGC GCTGGCGCTG
GTGTTCATGC TGCCGACGCA GCGCTCGACG CGCTACCTGA TTCCGGCCAT GCCAGCACTG
GCCGTGGTGA TGGCGCTGTA CTGGCACCGG ATTGGCCGCA TCTGGTTCAG CCTGACGCTG
GCGGTCTGCA TGATCGGCCT GCTGGCGATG GGCCTGATCG GCTATGGCGC CGTGCGGGCC
ACGCAGAACC CCTGGGTGTT CTCGCCGCTG TTCTGGCTGT TCGTGGCGGC CTCGGCGCTG
GCCTGCCTCA TCGGCATCTT CAAGAAGGCC TGGAGCCGGC CGGTTGCCGC GCTGGCCGGG
TTCAGCGTGC TGTTTGCGCT GGCCTGGGTC ACGAACCCGT TCAACGGCGA ACTCGGCCGT
TTCCGCCCCG AAACCAATGC CCTTCTCAAG GGCCAGAAGG TGCAGGTGCC GAGCAATTTC
AACGGCCATT TCGAGCGCTA CGAATTCATC ATTCCGGGCG CGAAGATCGT GGACTATTTT
GCCGCCCAGC CGGTCGATTA CGCCGATGTG GAGGGCCTGT TCAAGACCAG CCGCTACGTG
CTGGTGCAGC GGCGCATCGG GCAGCCGCCG TGCACCCGCT GCCGCATCAT TGACGAGCGC
TGGGATCTGC GCTCGCGCCA AGACGAAAAC GACGGCTTCA TGGCCGCCCT GAAGACGCCC
GAGACTTACT GGTACGCCAA GGAATACCTG GTCGAGCCGC TGGCGCCCTG A
|
|---|
| Protein sequence | MSSPEKSPAA RLPHHLVWIG LAIAVALGYL FGLGGDHIPR NGDELVYANI ARLTAASGHW
LPLHSAWDFM RNTKPPLLFW QAMVAGGWGE HWTLLRLRLP SVAYTWGIAL MVGLLTWKTV
RGDAGATSGN AATAAQRNHH AMTMGAIAVL VYLSFFTTYR YGRPYLTSAP ETFWLFGVFF
AIAWSPARLL ASSWKFPLIA GLAIGIGCLY KSFVMVAPVG FALALCYQAV GARLAPWKLA
RPGIVADGVK VLAICALGLA VFGLWFAIDP QPGEVWREFV VGENAGKMNS SKGYFQTAFS
GSSGILTILT GYFSNALFLL PLSVGCFVAA WRSWRQRQGT AQTISDAEKI MWLWLLALAL
VFMLPTQRST RYLIPAMPAL AVVMALYWHR IGRIWFSLTL AVCMIGLLAM GLIGYGAVRA
TQNPWVFSPL FWLFVAASAL ACLIGIFKKA WSRPVAALAG FSVLFALAWV TNPFNGELGR
FRPETNALLK GQKVQVPSNF NGHFERYEFI IPGAKIVDYF AAQPVDYADV EGLFKTSRYV
LVQRRIGQPP CTRCRIIDER WDLRSRQDEN DGFMAALKTP ETYWYAKEYL VEPLAP
|
|---|
| |