Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0228 |
Symbol | |
ID | 4687991 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 234667 |
End bp | 235974 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639833221 |
Product | extracellular solute-binding protein |
Protein accession | YP_980474 |
Protein GI | 121603145 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.6533 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.282981 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACC CCCTTGAACT CACCGCAGGT GTGAGAGCCC AGCGTGCGTG CATGGCGTTT CTAGCGTTCG GGCTGGCCTG TTCGCTGCCA GCTGCGGCCC AGACGCTGGA CGTCTGGGTT CACGCCGGGC TGGGTCCAGA GCGCGATGCC TACACGGCAT CGATCAAGGC GTTCAACGAG GCCGGGCGCA ATCTCGGCGG CAAGGCGCAG GCTGTCCTGG TTCCAGTGCC TGAAGTGGGC TACAACGAGG CGGTGGCGAA GGCTGCGGCT GACGGGCGGC TGCCTTGCGT GCTTGAGTTC GATGGCCCCA ATGTCGCGGC CTACGCCGCG GCGGGGCACC TGCTGCCGCT GGAAAAAGTG CAGTCGCTGG CCAGGATTCG CAATTCGATG CTTGCGTCGC TGGTGCGTCA GGGAACGGTC AATGGGCGGC TGTACAGCGT GGCTCAATAC GACTCAGGTA TGGCGCTATG GGGAAATCGG AACATGCTGA ATGCCGCCGG TGTGCGAATT CCAGCCAGAG CGGGCGACGG CTGGACGTTG ACAGAGTTTG AAGACGTTCT CAAGCGGCTG AAGAACGCTG GCGTGCCTTC GCCGCTGGAC ATGAAGTTCA ACTATGGCGT CGGAGAATGG TTCACTTATG GGTTTGCCCC GATTGTTCAG GGTTTCGGCG GCGACCTGAT CGAGCGCGGC AGCATGCGCA GTGCCCAGGG TGTGCTCAAC GGCCCGGGCG CCGTCAAGGC CATGAGCGCC TTGCAGAGCT GGATCAAGGC CGGTTACGTG GATGTCATGC CAAAGGATGA TCGCGCATTC ATCGAAGGTC GCTCGGCCCT GTCTTGGGTG GGGCATTGGG TCTACAAGGA CTACAAGCAA GCGCTTGGAG ACAACCTAGT GCTGATGCCC CTGCCTCGCT TCGGTGTGCG GCCCGTGGTT GGCTCCGGGT CGTGGAACTT CGGCATCGCG GCGTCGTGCA AGGAGCCCCA GCTCGCCATT CGCTTTATTG AACACCTGAT GAGTAGCGCT GAGGTACTGC GCGTCACGGA CGTAAACGGC GCGGTACCCG GCACTGGCGT CGCGATGGCA TTTAGCCGGC ACTATGGGCC CACCGGAGAG CTGCGCCTGT ACGCCGACCA GCTAATGTCG GGCCAGGCTC AGGTGCGTCC GGCTTCACCG GATTACCCTG CCATCACTGC CGAGTTTTCA AATGCCGTGA ATCGCATCGC TCGCGGTGCA GACCCTCAGC AGACACTCAA CCAGGCGGTG ATCAACATAG ATCGAAAAAT AGAGAAAGCG CGTGCCGCGC GCCCTTGA
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Protein sequence | MKNPLELTAG VRAQRACMAF LAFGLACSLP AAAQTLDVWV HAGLGPERDA YTASIKAFNE AGRNLGGKAQ AVLVPVPEVG YNEAVAKAAA DGRLPCVLEF DGPNVAAYAA AGHLLPLEKV QSLARIRNSM LASLVRQGTV NGRLYSVAQY DSGMALWGNR NMLNAAGVRI PARAGDGWTL TEFEDVLKRL KNAGVPSPLD MKFNYGVGEW FTYGFAPIVQ GFGGDLIERG SMRSAQGVLN GPGAVKAMSA LQSWIKAGYV DVMPKDDRAF IEGRSALSWV GHWVYKDYKQ ALGDNLVLMP LPRFGVRPVV GSGSWNFGIA ASCKEPQLAI RFIEHLMSSA EVLRVTDVNG AVPGTGVAMA FSRHYGPTGE LRLYADQLMS GQAQVRPASP DYPAITAEFS NAVNRIARGA DPQQTLNQAV INIDRKIEKA RAARP
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