| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmob_1808 |
|---|
| Symbol | |
|---|
| ID | 5756718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Petrotoga mobilis SJ95 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010003 |
|---|
| Strand | - |
|---|
| Start bp | 1984981 |
|---|
| End bp | 1987950 |
|---|
| Gene Length | 2970 bp |
|---|
| Protein Length | 989 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641302997 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_001568820 |
|---|
| Protein GI | 160903239 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0349481 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACTTCTT GGGTAGAATT ATGTATAATA ATATATATAC GTATTCCTAA AGGAGGAGGT
TCTATGTATT TTTTTGAGAG TCTATTGGAT ATTAAAGGGC GGGAGGAAGA GTTTTTTAAT
AAGGAGATAA GCATAAAAGG CCAAATTTTT CATGTTAATG AGTCAAAGGA TTTTTATTAT
CTGTTTGTTT CTGATTATAG TTATTCTTTT TTGTGTAAGT CAGAAAGCGG GAAAACGCCC
CGAACAGGGT CAAGGAAAGG TGAATGGTTT AGATTTGAAG GGGTATTAGA GTACGATTGC
GAAATGGGGA GTTATTGTTT GAAGGTAAAC ACAATAAAAG CTGCTGTTCA CTTATCTTGG
CATGATCTTT CGGTAGAAAA GAGGGTTGAA CTTCATGCTC ATTCAAAGAT GAGCTCAAAG
TTGTCTATAT TGGGTATGGA GGAGTTGGTG GATGCTGTTT CTTCGTTTGG ACAAAAGGCG
GTTGCCATTA CTGATAACGA AAATGTGCAG ATAATTCCTT ATTTCTATGA GTATGCTAAA
AGAAAGGGTA TAAAAGCTAT TTTTGGTTGT GAGTTGAATG TACACGATGA GAGAAGAGGG
ATCGTAAAAC ATGTGAATGT TTTGGTTAAG AATAAAGAGG GGTTGAAGAA TCTTTATAAA
ATAATATCGA TTTCACATAT GAACGTTGTG AATAAAAGTG CAATAATTTC ACTCTCTGAT
TTGAAGAATT TGAGAAAAGG GCTACTTTTA GGCTCTTCAC TGGATGGGTT TTTGCTTTAC
TCCTATTTGA ACAAGTATTC TACTAACGAT TTGAAGGAAT GGATAACTTT TTTTGATTAT
ATAGAGCTTT TCCCTATGAA TTGTTATAAT GATTTATGTT TGGAGAAGGG TAAGATTATC
GATTATTCTA GAACTGTCTA TGAGATTGCA AAAGATGTCA GAAAGCCTGT TGTTATGTCC
GGTGATGTTC ATTATTTGAG AGAAGAAGAT CGAGAGTATT TAAACGCTAT GATCGTTGGT
ACCTCCACAA AGAGTAAACC AAGAAAGACT GTGCGAAGTG TTAATTATTT TAGGAGCACT
TCCCAGATGT ACGATGAGGC GTTTGAGATC TTCAAAAAGC GTGGCATTGC AAAAGAAATT
GTGGTGAAAA ACACGAATAA AATCGCTGGT GAGATAGAGG AGCTTGCTCC TTTTGATTTT
AAATTGAAGG CGCCTTATAT CCCCTCCGCC GACCAAAATT TGAGAGATAT CGTTTATAGC
AACGCAAAAA AGAGGTATGG GGAAAAGTTA CACCGTATAA TTATAGATAG GATAGAAAAG
GAATTGAAAA GTATAGTAGA TAACGGGTAT GCGGTGATAT TTTTGATCTC AGCCGATATG
GTCGAGAAGT CTTTAGAGAT GGGTTACCCA ATCGGTTCGA GGGGTTCTGT TGGTTCTTCG
CTTGTGGCTT TTCTTTTGGG GATAACGGAG GTTAATCCGT TGCCGCCACA TTATTTTTGT
GAGAGTTGTG GGTTTATAGA GTTCGTGGAG AATTTGAATT TGAGTGGTTT TGATTTAAAA
GAGAAGTCAT GCCCAAATTG CGGTGCAATT TTAAACTCCG ATGGGCATAA TATAAGGTTT
GAGGTTTTTA TGGGGTATTC TGGCGAGAAG ATCCCAGATA TAGACGTGAA TTTTTCGGCT
GAGATCTTCA CCGATATACA GAGGTTCTTG GAAGAGAAAT TTGGTAGGAA TTATTGTTAC
AAGGCAGGTA CGATTAGTAC CATCTCAAGG TACAACGCTA TGAAGATGGC TCTCAATTAC
TTCAAGGATG AAGATATGAA TTTTGCACAT CTTTTTTGGA TTTCTCAGAA AATAAAAGGA
ACAAAGTTGA ATACAGGTCA ACATCCATCG GCTATGATAA TAATCCCTCA AGAGTACGAT
GTTCACGATT TCACTCCTTA CCAATATTCT GCAAATTCTC CTGAGATTGG TATCGTTACG
ACACATTACG ATTTTAAGGC TTTAGAAAAT GATTTGTTGA AAATAGACGT GTTGTCTCAC
GATGGGCCAA CATTTTTAAA AATGCTTAAG GATTTAACCG GTTACGATTA CAACGATATT
TCTATGCACG ATGAACGGAT TCTTTCACTT TTCTCTTCTA CAAAGGAGTT GGGAGTGGAT
CTTTCGGAGA TAGGTACGGA GATTGGCACG TTGGGTGTTC CAGAAGTTTG GACACCTTTT
TCCCATAAGA TGCTCACCGA GACAAAGCCT GAAACTTTTT ACGATCTGTG TAGGACGAAT
TCACTTGCAC ACGGAACGGA TATTTGGTTC AACAACGCCC GTGAGATAGT TTTGAAAAAT
GTTGCAGGTA TCGATCAGAT CGTTAGCTGT AGAGATGATA TTTTGACAAC ACTTGAGTAT
TTCGGAGTGG AACCAAAAAC AGCCTTTATG GTTATGGAAA AAGTGAGAAA GGGGAAAGAG
CTTACAGAGA AAGAGCTGAA GGCGATAGAT GATTCAGAAG CTCCCGAATG GTACCTTGAT
TCTTTGAAGA AGATTCATTA TCTCTTCCCA AAAGCCCATG CGGTTGCCTA CATGATAATG
GCGTACAAGA TAGCGTTTTA CAAGCTTTAT TATCCTCTTG AGTTTTACAG CGTTTATTTC
ACTATTAGAG CGAGGTTTTT TGATATTGAC ATTATAATGG ATGAAGACTT GACTGTTAAA
ACGATTAAGA AGCTTTCAAA AAACGAATAC CAACATAATT ACGAAGAGTC CAACTTTTAT
TCCACACTTA AAACCGCCTA TGAGATGAGA AAGAGAGGTT TTGGTTTTTT AAGACCGGAT
CTTTACAAGA GCGAGGCAAA ACTTTTTAAA ATTGAAGGAG AATATTTGAG GATTCCTCTG
ACCAAAGTGA GAAATATTGG TAGCAAGAAT GCTCAGCGGA TCCTAAAAGA AAGGGGAGAA
GCCACACAGA AAACTCTCCT TTCAAAATAA
|
|---|
| Protein sequence | MTSWVELCII IYIRIPKGGG SMYFFESLLD IKGREEEFFN KEISIKGQIF HVNESKDFYY
LFVSDYSYSF LCKSESGKTP RTGSRKGEWF RFEGVLEYDC EMGSYCLKVN TIKAAVHLSW
HDLSVEKRVE LHAHSKMSSK LSILGMEELV DAVSSFGQKA VAITDNENVQ IIPYFYEYAK
RKGIKAIFGC ELNVHDERRG IVKHVNVLVK NKEGLKNLYK IISISHMNVV NKSAIISLSD
LKNLRKGLLL GSSLDGFLLY SYLNKYSTND LKEWITFFDY IELFPMNCYN DLCLEKGKII
DYSRTVYEIA KDVRKPVVMS GDVHYLREED REYLNAMIVG TSTKSKPRKT VRSVNYFRST
SQMYDEAFEI FKKRGIAKEI VVKNTNKIAG EIEELAPFDF KLKAPYIPSA DQNLRDIVYS
NAKKRYGEKL HRIIIDRIEK ELKSIVDNGY AVIFLISADM VEKSLEMGYP IGSRGSVGSS
LVAFLLGITE VNPLPPHYFC ESCGFIEFVE NLNLSGFDLK EKSCPNCGAI LNSDGHNIRF
EVFMGYSGEK IPDIDVNFSA EIFTDIQRFL EEKFGRNYCY KAGTISTISR YNAMKMALNY
FKDEDMNFAH LFWISQKIKG TKLNTGQHPS AMIIIPQEYD VHDFTPYQYS ANSPEIGIVT
THYDFKALEN DLLKIDVLSH DGPTFLKMLK DLTGYDYNDI SMHDERILSL FSSTKELGVD
LSEIGTEIGT LGVPEVWTPF SHKMLTETKP ETFYDLCRTN SLAHGTDIWF NNAREIVLKN
VAGIDQIVSC RDDILTTLEY FGVEPKTAFM VMEKVRKGKE LTEKELKAID DSEAPEWYLD
SLKKIHYLFP KAHAVAYMIM AYKIAFYKLY YPLEFYSVYF TIRARFFDID IIMDEDLTVK
TIKKLSKNEY QHNYEESNFY STLKTAYEMR KRGFGFLRPD LYKSEAKLFK IEGEYLRIPL
TKVRNIGSKN AQRILKERGE ATQKTLLSK
|
|---|
| |