| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmob_1506 |
|---|
| Symbol | |
|---|
| ID | 5757260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Petrotoga mobilis SJ95 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010003 |
|---|
| Strand | + |
|---|
| Start bp | 1623174 |
|---|
| End bp | 1625150 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641302702 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001568532 |
|---|
| Protein GI | 160902951 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGC TTCGTTCCGA ATACGAACCT CAAGGCGATC AACCAAAAGC AATAGAAGAA
CTCTCTTCTG GGATCAATAA AAATTATAGG TTCCAAACTT TACTGGGCGT TACTGGATCT
GGTAAAACAT ATACAATGGC TAATATTATT GCAAACGTGA ATCGACCAAC TTTAGTTCTC
TCTCCGAATA AAATCTTAGC CGTTCAACTA TACAACGAAT TCAAAGAGTT CTTCCCGGAA
AATAGAGTCG AATTTTTTAT AAGTTATTAC GATTACTATC AACCAGAAGC CTACATCCCC
TCTCGAGACA TATACATAGA AAAAAATGCA GACATAAACG ATATTTTAGT TAAAATGAGG
CTCTCAACGT TAAAATCAGT TTTAACAAGG AGAGACGTAA TTGTAGTTTC AAGCGTCTCA
GCTATCTATG CCTCGGGCAA TCCCGATGAC TTTTCAAACA TAAACCTTTA TCTGAGAGTG
AATGAAGAGT ATTCTAGAAG AGAAATCTTA ATTAAACTTG GTAAAATGCA ATACACAAGG
CAAGAAAAAG ATTATCTCGG TGGAACGTTC AGATGGAAGG GTGATGTTTT AGAGATATTC
CCTCCTTACG AAGATTTTGG AATAAGGGTA ACTTTTTTCG ATAACGAAGT CGAAAAGATC
GAAGCACTTG ACGTATTCAA CAGAACCATA ATAGAAGAAT TTGATAAAAT TACTATTTAT
CCAGCGAAAG AATTTGTAAC CAGTCAGGAA AAGATTTTTT CAGCTATTGA AAGAATAAAT
GCCGATCTGC AAACCCAAAT AGAATATTTC AAAAGGGAAG GTAAACTTTT AGAAGCTCAA
CGAATAGAGC AAAGGGTAAA ACAAGATTTA GAATTCCTTC AAACATTGGG ATACTGTAAA
GGGATAGAAA ATTATTCAAG GTATTTCGAT GGTAGGAATC CTGGAGACTC TCCATGGACA
CTTTTGGATT ACTTCGATGA AGATTTTGTT ACTTTTATTG ACGAATCTCA CATAGCGGTA
CCACAGTTAA GGGCAATGTT CAGAGGGGAT TACGCGAGGA AGAAAAATTT AGTTGATTAC
GGGTTTAGAT TACCATCAGC CTTAGATAAC AGACCTTTAA GATTCGAAGA ATTTTTAGAA
AAAACCAATC AAATTATCTT TGTATCAGCT ACCCCAGGGC CATTTGAAAT GGAAGTATCA
GACCAAATAG TTGAACAGAT TATTAGACCT ACAGGACTTG TGGACCCAAA GGTTGAAGTA
AAATCTACGG AAGGTCAAGT GGACGATTTC ATATCCGAAG TAAAAGAGGT TGTAGAAAGA
GGAGAAAGAG CTCTAGCGGT GGTTTTAACA AAGAAAGATG CCGAAATCCT CTCAGATCAT
TTAAACCTAA TGGGCATTAA ATCATTGTAT CTACACTCTG AACTCGATAC AATTGAAAGG
TCAGAGGTAA TAAAAAAAAT AAGAAACGGC GAAATTGAAG TAGTTGTTGG TGTAAACTTA
CTTAGAGAAG GGTTAGATTT ACCGGAAGTT TCTCTTGTTG CCATAATGGA TGCAGATAGA
GAAGGATTTT TAAGGTCTGA AACAACGTTG ATTCAAACGA TTGGTAGAGC TGCAAGAAAC
GTTCAAGGTA AGGTATTACT GTACGCCGAC CGAATAACGG AGGCGATGAA AACTGCCATC
GATGAAACAA ACAGAAGAAG AGAAATACAG ATTCAATACA ATATAGATAA CAACATCACT
CCAAAAAGTA TCATTAAAAA ATTACCAGAA GACATGTTTG CACCATTCAA AGATAACGAG
GTAAAAGAAG AAGATTATAT ATTCGCTGTA GAGGAGAACC TCTCTCCGGA TGATTACTTG
GCTATGCTTG AAGAAAAAAT GTACGAAGCA GCCTCCGAAT TAAAATACGA AGAAGCAGCA
AGATACCGAG ACGAGATCAA AAGGATAAAA AGAAAATACA ACATCAAACA AAATTGA
|
|---|
| Protein sequence | MFKLRSEYEP QGDQPKAIEE LSSGINKNYR FQTLLGVTGS GKTYTMANII ANVNRPTLVL
SPNKILAVQL YNEFKEFFPE NRVEFFISYY DYYQPEAYIP SRDIYIEKNA DINDILVKMR
LSTLKSVLTR RDVIVVSSVS AIYASGNPDD FSNINLYLRV NEEYSRREIL IKLGKMQYTR
QEKDYLGGTF RWKGDVLEIF PPYEDFGIRV TFFDNEVEKI EALDVFNRTI IEEFDKITIY
PAKEFVTSQE KIFSAIERIN ADLQTQIEYF KREGKLLEAQ RIEQRVKQDL EFLQTLGYCK
GIENYSRYFD GRNPGDSPWT LLDYFDEDFV TFIDESHIAV PQLRAMFRGD YARKKNLVDY
GFRLPSALDN RPLRFEEFLE KTNQIIFVSA TPGPFEMEVS DQIVEQIIRP TGLVDPKVEV
KSTEGQVDDF ISEVKEVVER GERALAVVLT KKDAEILSDH LNLMGIKSLY LHSELDTIER
SEVIKKIRNG EIEVVVGVNL LREGLDLPEV SLVAIMDADR EGFLRSETTL IQTIGRAARN
VQGKVLLYAD RITEAMKTAI DETNRRREIQ IQYNIDNNIT PKSIIKKLPE DMFAPFKDNE
VKEEDYIFAV EENLSPDDYL AMLEEKMYEA ASELKYEEAA RYRDEIKRIK RKYNIKQN
|
|---|
| |