Gene Pmob_1001 details

Gene Information

• Locus tag: Pmob_1001
• ID: 5757758
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Petrotoga mobilis SJ95
• Kingdom: Bacteria
• Replicon accession: NC_010003
• Strand: -
• Start bp: 1069161
• End bp: 1071005
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641302210
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_001568046
• Protein GI: 160902465
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCTCGC AAAATACTCC TCTGTATAAT GCACTTAAGA ACATGAGTTA CAAAGAATTA 
GAAGAAATAG CTCAAGAAAT TCGAAAGTAT ATTTTTAACG TTGTATACAA CAACAATGGT 
CATCTTGCTT CGAATTTGGG CGTTGTGGAA TTAACAATTG CATTGTACAG GATATTTGAC 
CCCATAGAAG ACGTTATTAT TTGGGATACC AGTCATCAAT CTTACGTGCA CAAACTTTTG 
ACGGGGCGTT GGAAAGATTT CAAAACCATA CGTGAAAAAG GTGGCATAAG TGGGTACACA 
AATATCTACG AATCACCAGC GGATAGATTC GGTGCTGGGC ATGCAGGGAC TTCCATAGCA 
GCCTCTTTGG GTTATGCACT ATCTGATAAG ATAAAAAACA GGAAAAGGAA TATAGTTGCT 
GTTATTGGAG ATGGAGCCTT AGGTTGTGGG ATGGCTCTTG AATCGTTAAA TCAGTTGAAC 
TATCAAGATG TAAAAGTTAA AATAGTTCTA AACGATAACA ACATGGCTAT TTCAAAAAAT 
GTAGGAACGA TTTCCCAATT GTTGAATAAT TTTAGAATAA AAAAAGAGTA TACCCAAGCA 
AAAGAAATTT TAAAGAGTTC TTTAGAAGAT TCTTCTTTGG GTAAGGATGT AGAATCAGTT 
TTAAAAAAAG TCAGAAACGC TTTAAAATTC TCTATTTACG ATACTCCAGC ATCACTGTTT 
GAAGAGTTAG GAATCAAGTA TTATGGACCC GTCGATGGAC ATGATATCAA AAAAATGGAA 
GAGTTTTTAG AATTCATTAA AGCTTATGAT GAGAAGTCTG TAATACTGCA TGTTGTTACC 
ACCAAAGGCA AAGGTTTCGA AGAAACCGAG AAATCTCCCA CCAAATATCA TGGCGTATCC 
AAAAAAGAAC TGAACAAAGT CTCTTACAGT AAAATTGTTG GGCATACGTT ATCTCATTTA 
AAAGATTATG AGTTTTTAGC TTTTACGGGA GCCATGTCCG ATGGGACTGG GCTAAATGTC 
CTTCAAGAAA TATGCCCTGA CAAGGTCATC GATATGGGTA TCACCGAACC AAGTATAGTC 
ACTACGGCGT CTGCTCTGTC TTTAGGTGGG GTCTTGCCGG TTGTTGATAT TTACTCTACT 
TTCATGCAAA GAGCGTTTGA TTCACTTATT CATGATGTAG CCTTACAAAA GATCCCAGTT 
CTATTTTTGT TGGATAGGGC CGGTTTGGTT GGAGAAGATG GTCCAACTCA TCATGGGGTT 
TTTGATATAG CATATACGAG GTTAATTCCA AATGTTGAAA TCTGGACGCC GTTGAACGCC 
CAAGATTTAG CTAATATGAT TTACACTTCC GTAATAAAGG GTTTGAAAAA GCCTCGGTTT 
ATTAGATTTC CAAGAGATGG AGAAACGATA GAAATACAAA ATATACTCGA CAATCTTCAA 
ATAGTAGATG GTGAGTGGAA GTATCTAAAA ATGGCCGATT CTAGGATATA CGCCCTTGCC 
GTTGGAACTA TCTCGCAAAA TGTTTATGAA GCTCTTAAAG ATTATGACGT TAATATAATC 
GGGGTACGAA GTGTCAAACC TTTAAATGAA TACTTTTTGG AAATATTAGA ACAAAGGGCT 
GAATATATTT TTGTTTATGA AGAGGGAAGT TTGAAAGGTG GTTTCAACGA AGAGATATTC 
AAACTGAGAA ATAAAAAAAT TTACCCATTT GGTGTGAAAG ATGAGTTTGT TTCTCATGCA 
ACAAGAGAAG AACAATTAGA CGAATGCGAT CTTTCTATAA AAGCGATAAA GGAAAACTTT 
GAAAAAATTA TCTCCAAGGT TAAAACTCAA TCATCTTATG AATAA 

 

Protein sequence

MTSQNTPLYN ALKNMSYKEL EEIAQEIRKY IFNVVYNNNG HLASNLGVVE LTIALYRIFD 
PIEDVIIWDT SHQSYVHKLL TGRWKDFKTI REKGGISGYT NIYESPADRF GAGHAGTSIA 
ASLGYALSDK IKNRKRNIVA VIGDGALGCG MALESLNQLN YQDVKVKIVL NDNNMAISKN 
VGTISQLLNN FRIKKEYTQA KEILKSSLED SSLGKDVESV LKKVRNALKF SIYDTPASLF 
EELGIKYYGP VDGHDIKKME EFLEFIKAYD EKSVILHVVT TKGKGFEETE KSPTKYHGVS 
KKELNKVSYS KIVGHTLSHL KDYEFLAFTG AMSDGTGLNV LQEICPDKVI DMGITEPSIV 
TTASALSLGG VLPVVDIYST FMQRAFDSLI HDVALQKIPV LFLLDRAGLV GEDGPTHHGV 
FDIAYTRLIP NVEIWTPLNA QDLANMIYTS VIKGLKKPRF IRFPRDGETI EIQNILDNLQ 
IVDGEWKYLK MADSRIYALA VGTISQNVYE ALKDYDVNII GVRSVKPLNE YFLEILEQRA 
EYIFVYEEGS LKGGFNEEIF KLRNKKIYPF GVKDEFVSHA TREEQLDECD LSIKAIKENF 
EKIISKVKTQ SSYE