Gene Pmob_0322 details

Gene Information

• Locus tag: Pmob_0322
• ID: 5757784
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Petrotoga mobilis SJ95
• Kingdom: Bacteria
• Replicon accession: NC_010003
• Strand: +
• Start bp: 345978
• End bp: 346535
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 641301523
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_001567387
• Protein GI: 160901806
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00023377
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACAGTT TATCCAATCT TTTGGACAAC AAAATCTCTG TGGCAAAAAT TGTTAATAGC 
CATGGAGTGC ACGGAGAAGT AAAAATAGTA CCTTTTACCA ACGTAAAAGA TGTGATAACG 
AACTTAGAAG AAGTTCTTTT ATACAACACC TCAACCAGAA ATTTCTTCTT TAGTAAGGTA 
CTACAAGTTA AACCATTAAA TAAATTTTTT GTATTGAACT TACGTGGAAT AAAGGATATG 
GACGAAGCTA AAAAAATGAT AGGGTATGAA GTTTTTATCG ATAAGAAAGA TCTTCCTTCT 
CTTAATAGTG AGGAATATTA CTGGTATGAG ATTTTAGATT CTGAGGTGTA CTATGAAGAT 
GGGGAATACG TTGGAAAAGT AGAAGAAATA ATTCAAACAG GTGCAAACGA CGTTATTTCT 
ATAAAAAACC TTGAAGATGA TAAAGAAGTT CTCATACCAA TGACAGATCA TTACATTATT 
GAGTTAAAAA AAGAGGATAA AAGTATTATA GTAAAAAAGA TAGAGTGGTA CGAAAATGGA 
ACAAATCAAG CGGATTAA 

 

Protein sequence

MNSLSNLLDN KISVAKIVNS HGVHGEVKIV PFTNVKDVIT NLEEVLLYNT STRNFFFSKV 
LQVKPLNKFF VLNLRGIKDM DEAKKMIGYE VFIDKKDLPS LNSEEYYWYE ILDSEVYYED 
GEYVGKVEEI IQTGANDVIS IKNLEDDKEV LIPMTDHYII ELKKEDKSII VKKIEWYENG 
TNQAD