Gene Pmen_4393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4393 
Symbol 
ID5107246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4816003 
End bp4816620 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content68% 
IMG OID640505659 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_001189872 
Protein GI146309407 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones49 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.140673 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGCGC TGTTTCTGCT GGTTGCCGGT ACTCATTTCG CGGCCTTGCT GTCGCCGGGG 
CCGGACTTCT TTCTGCTGAT TCGCACCGCG CTGGCCAAAG GCCGGCGCCA GGCCGACGGT
TGTGCCTGCG GCATCGCCCT GGCCAACCTG CTGATCATGC TGCTGGTGCT GCTCGTCATG
GCGTTGTTAC CCGCCGAGGG CAGTTGGCTG TGGCGCGGCC TGCAGGTCGT CGGCGGGCTG
TACTTCGCCT GGATCGGTCT GCAGGCGCTG GCCTCGCGGC GGGATCTGGT CCTGCCGCAG
GGCGAGCAGC TGCGGCTGGG CGGGGTGTGG AAGGGCATGC GCCAGGGCCT GCTGTCCTGC
AGTCTCAATC CCAAGGTGCC GCTGTTCTAT GCCGGGCTGT TCGGGGTGCT GCGCGAATCG
GCGATGCCGG GCTGGGGGTT GGGCCTGGCA ATGCTGTGGA TGACCTTGGT GGTGCTGTTC
TGGGATCTGG CGCTGGTGCG CCTGCTCGAT CAGGCACGCT GGCGCGGCTG GTTGCAGCGT
CGCGTGCGCT GGCTGGACCG TGGCTGCGGC GGCCTGTTGC TGGCTCTGGG CGGCTGGCTG
TTGCTGGGGG CGCTGTAG
 
Protein sequence
MFALFLLVAG THFAALLSPG PDFFLLIRTA LAKGRRQADG CACGIALANL LIMLLVLLVM 
ALLPAEGSWL WRGLQVVGGL YFAWIGLQAL ASRRDLVLPQ GEQLRLGGVW KGMRQGLLSC
SLNPKVPLFY AGLFGVLRES AMPGWGLGLA MLWMTLVVLF WDLALVRLLD QARWRGWLQR
RVRWLDRGCG GLLLALGGWL LLGAL