| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3878 |
|---|
| Symbol | uvrA |
|---|
| ID | 5106412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4264416 |
|---|
| End bp | 4267256 |
|---|
| Gene Length | 2841 bp |
|---|
| Protein Length | 946 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640505132 |
|---|
| Product | excinuclease ABC subunit A |
|---|
| Protein accession | YP_001189357 |
|---|
| Protein GI | 146308892 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.847875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACAAGA TCCTCATTCG TGGTGCCCGC ACCCACAACC TCAAGAACAT CGACCTGACC
CTGCCGCGCG ACAAGCTGAT CGTGATCACC GGCCTGTCCG GCTCCGGCAA ATCCTCCCTG
GCCTTCGACA CGCTGTACGC CGAGGGCCAG CGCCGTTACG TCGAATCCCT GTCGGCCTAC
GCCCGGCAGT TCCTGTCGAT GATGGAAAAA CCCGACGTCG ACACCATCGA AGGCCTCTCC
CCGGCCATCT CCATCGAGCA GAAGTCCACC TCGCACAACC CGCGTTCGAC GGTGGGCACC
ATCACCGAGA TCTACGACTA CCTGCGCCTG CTCTATGCCC GCGTCGGTAC GCCGCGCTGC
CCGGACCACG ACGTGCCGCT GGAAGCGCAG ACCGTCAGCC AGATGGTCGA TCAGGTGCTG
GCCCTGCCGG AAGGCCGCAA GCTGATGCTG CTCGCCCCTG TCGTGCGCGA GCGCAAGGGC
GAGCACCTGT CGGTGTTCGA GGAGCTGCGC GCGCAGGGTT TCGTCCGCGC CCGGGTCAAC
GGCAAGCTGC ATGAGCTGGA CGAGCTGCCC AAGCTGGACA AGCAGAAGAA GCACAGCATC
GATGTGGTGG TGGACCGCTT CAAGGTGCGC GAGGACCTGC AGCAGCGCCT GGCCGAGTCC
TTCGAGACCG CCCTCGGCCT GGCCGACGGC ATTGCCCTGA TCGCGCCCAT GGACGACGAA
GAAGGCGAAG AGATCATCTT CTCCGCGCGC TTCGCCTGTC CGCACTGCGG CCATTCGATC
AGCGAGCTGG AACCCAAGCT GTTCTCCTTC AACAACCCGG CCGGCGCCTG CCCGACCTGC
GACGGCCTGG GCGTGAAGCA GTTCTTCGAC GCCAAGCGCC TGGTCAACGG CGAACTGACC
CTGGCCGAAG GCGCCATCCG CGGCTGGGAT CGGCGCAACG TCTACTACTT CCAGATGCTC
GGTTCGCTAT CCAACCACTA TGGCTTCAGC CTGGAGCAGC CGTTCGACGA GCTGGCCGCC
GAGCACCAGA AGGTGATCCT GTTCGGCAGC GGTACGCAGA GCGTCGACTT CAAGTACCTC
AACGACCGCG GCGACATCGT CAAACGCTCG CACCCCTTCG AGGGCATCAT CCCCAACCTC
GAGCGCCGCT ATCGCGAAAC CGAATCGGCC AGCGTGCGCG AGGAACTGGC CAAGTTCCTC
AGCACCCAGC CCTGCCCGGA CTGCCGCGGC ACGCGCCTGC GCCGCGAGGC TCGGCACGTC
TGGGTCGGCG AGAAGACCCT GCCGGCGGTG ACCGGCCTGC CGGTGGGCGA TGCCTGCGAT
TACTTCGGTG ATCTGCACCT GACCGGCCGC CGTGGCGAGA TCGCCGAGAA GATCCTCAAG
GAAATCCGCG AGCGCCTGCA GTTCCTGGTC AACGTCGGCC TCGACTACCT GACTCTGGAT
CGCAGCGCCG ACACCCTGTC CGGTGGCGAG GCGCAGCGCA TCCGCCTGGC CAGCCAGATC
GGCGCCGGCC TGGTGGGCGT CATGTACATC CTCGACGAGC CCTCCATCGG CCTGCACCAG
CGCGACAACG AGCGCCTGCT GGCCACCCTC ACCCACCTGC GCAACCTGGG CAACACGGTG
ATCGTGGTCG AGCACGACGA GGACGCCATC CGCCTGGCCG ACTATGTGGT GGATATCGGC
CCCGGCGCCG GCGTGCACGG CGGGCGCATC GTCGCCGAGG GCACCCCCGA GCAGGTCATG
GCGCATGCCG ACTCGCTGAC CGGCAAGTAC CTGTCCGGCC GCGAGAAGAT CCGCTACCCG
GCCACCCGCA CCCCGCGCGA CAAGAAGAAG CAGCTCAAGC TCAAGGGCGC GCGCGGCAAC
AACCTGCGGG GCGTCGACCT GGAGATTCCG GTCGGCCTGC TCACCTGCGT CACCGGCGTG
TCCGGCTCGG GCAAGTCGAC CCTGATCAAC AACACCCTGT TCCCGCTCAC CGCCACCGCG
CTGAACGGCG CCACCAGCCT GGAGGCCGCC GCCCACGACG CGTTCGACGG TCTGCAGCAC
CTGGACAAGG TGGTGGATAT CGACCAGAGC CCGATCGGCC GCACGCCGCG CTCCAACCCG
GCCACCTACA CCGGCCTGTT CACCCCGATC CGCGAGCTGT TCGCCGGCGT GCCGGAGTCG
CGTTCGCGCG GTTATGGCCC GGGCCGCTTC TCCTTCAACG TCAAGGGCGG GCGCTGCGAG
GCCTGCCAGG GCGACGGCGT GATCAAGGTG GAAATGCACT TCTTGCCGGA CATCTATGTG
CCGTGCGACG TGTGCAAGGG CAAGCGCTAC AACCGCGAAA CCCTGGAGGT GAAGTACAAG
GGCAAGAGCA TCACCGAGGT GCTGGACATG ACCATCGAGG ACGCCCGCGC CTTCTTCGAT
GCCGTGCCGG CCATCGCCCG CAAGCTGCAG ACGCTGATGG ACGTGGGCCT GTCCTACATC
AAGCTCGGGC AGTCGGCGAC CACCCTGTCC GGTGGCGAGG CGCAGCGGGT CAAGCTGAGC
CGCGAACTGT CCAAACGCGA CACCGGCAAG ACCCTGTACA TCCTCGACGA ACCCACCACC
GGCCTGCACT TCGCCGATAT CCAGCAACTG CTCGACGTAC TCCATCGTCT GCGCGACCAC
GGCAACACCG TGGTGGTGAT CGAGCACAAC CTGGACGTGA TCAAGACCGC CGACTGGATC
GTCGACCTCG GCCCCGAGGG CGGCTCCAAG GGCGGCATGA TCATCGCCAC CGGCACACCG
GAAGAGGTCG CGGCCAATCC CGCGTCGCAC ACCGGGCACT TCCTCAAGCC GTTGCTGGAG
CGCGAGCGCA CCGCCAGCTA A
|
|---|
| Protein sequence | MDKILIRGAR THNLKNIDLT LPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSMMEK PDVDTIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LYARVGTPRC
PDHDVPLEAQ TVSQMVDQVL ALPEGRKLML LAPVVRERKG EHLSVFEELR AQGFVRARVN
GKLHELDELP KLDKQKKHSI DVVVDRFKVR EDLQQRLAES FETALGLADG IALIAPMDDE
EGEEIIFSAR FACPHCGHSI SELEPKLFSF NNPAGACPTC DGLGVKQFFD AKRLVNGELT
LAEGAIRGWD RRNVYYFQML GSLSNHYGFS LEQPFDELAA EHQKVILFGS GTQSVDFKYL
NDRGDIVKRS HPFEGIIPNL ERRYRETESA SVREELAKFL STQPCPDCRG TRLRREARHV
WVGEKTLPAV TGLPVGDACD YFGDLHLTGR RGEIAEKILK EIRERLQFLV NVGLDYLTLD
RSADTLSGGE AQRIRLASQI GAGLVGVMYI LDEPSIGLHQ RDNERLLATL THLRNLGNTV
IVVEHDEDAI RLADYVVDIG PGAGVHGGRI VAEGTPEQVM AHADSLTGKY LSGREKIRYP
ATRTPRDKKK QLKLKGARGN NLRGVDLEIP VGLLTCVTGV SGSGKSTLIN NTLFPLTATA
LNGATSLEAA AHDAFDGLQH LDKVVDIDQS PIGRTPRSNP ATYTGLFTPI RELFAGVPES
RSRGYGPGRF SFNVKGGRCE ACQGDGVIKV EMHFLPDIYV PCDVCKGKRY NRETLEVKYK
GKSITEVLDM TIEDARAFFD AVPAIARKLQ TLMDVGLSYI KLGQSATTLS GGEAQRVKLS
RELSKRDTGK TLYILDEPTT GLHFADIQQL LDVLHRLRDH GNTVVVIEHN LDVIKTADWI
VDLGPEGGSK GGMIIATGTP EEVAANPASH TGHFLKPLLE RERTAS
|
|---|
| |