| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3711 |
|---|
| Symbol | |
|---|
| ID | 5105706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4094966 |
|---|
| End bp | 4095880 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640504966 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001189191 |
|---|
| Protein GI | 146308726 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGTT TCGACGACCT TCAACTCTTC GTGCGTACCG CCGAATCCGG CAGCCTGTCC
GCCGCGGCGC GGCTGCTGGA TGTCTCGCCG GCCGTGGCCA GCGCCGCACT CAAGCGTCTG
GAGCAGCAGT TGCAGGTGCG CCTGCTGGCG CGCTCGACGC GCAGCCTGCG CCTGACGCCC
GAGGGCGAGC TGTATCTGGT GCATGCGCGG CTGGCGTTGC AGAGCCTGGA GGAAGGACGC
CAGCAACTGA TCGGCAGCCA GCAGGGCATT TGCGGTGTGC TGCAGCTGTC GGCGCCTTCG
GATCTGGGGC GCAACACGCT TTTGCCCTGG CTCGACGCAT TCCAGGCCGA GCATCCGCAA
CTGCAGCTGC GCCTGCTGCT GGCCGACCGG GTGGCCGATC TGTTCCGCGA GCCGGTGGAT
ATCGCCCTGC GCTACGGCGC ACCGGAAGAC TCCAGCCTGG TGGCACTGCC GGTGGCGCCG
GACAATCGCC GCGTGCTCTG CGCTGCACCA GCCTATCTGG CGCGTCATGG CGCACCGCGA
ACGGTGGAGG AGCTGGGCGG GCACAACTGC CTGCTGTACA TGCTGCACGG GCGCGTGCAT
GACCGCTGGC GCTTCCAGAG CGGCAAGCGC GAGACGCTGC TGACGGTGGC CGGCAATCGC
GTCAGCGACG ATGCCGATGT CACTCGGCGC TGGGCCGTGG CCGGGCAGGG CGTGGTGTAC
AAGTCCTGGC TGGACGTGGC CGACGATGTG CGCGAAGGCC GGCTGCAGGT GCTGCTGCCG
GACTGGCAGG GCGAGCCGAC ACCGCTGTAT CTGGTCTGCG CCCATCGCGC CCAGCTGAGC
AAGGCGGTGC ATCTGCTGCG CGAGTTCCTG CAGCGGCGTT GCCAGCGTCT GCTGGAGGCC
GCGCCGTGGC GTTAG
|
|---|
| Protein sequence | MLRFDDLQLF VRTAESGSLS AAARLLDVSP AVASAALKRL EQQLQVRLLA RSTRSLRLTP
EGELYLVHAR LALQSLEEGR QQLIGSQQGI CGVLQLSAPS DLGRNTLLPW LDAFQAEHPQ
LQLRLLLADR VADLFREPVD IALRYGAPED SSLVALPVAP DNRRVLCAAP AYLARHGAPR
TVEELGGHNC LLYMLHGRVH DRWRFQSGKR ETLLTVAGNR VSDDADVTRR WAVAGQGVVY
KSWLDVADDV REGRLQVLLP DWQGEPTPLY LVCAHRAQLS KAVHLLREFL QRRCQRLLEA
APWR
|
|---|
| |