| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3658 |
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| Symbol | |
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| ID | 5110119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4039327 |
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| End bp | 4042071 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640504913 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_001189138 |
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| Protein GI | 146308673 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACC TTTCCCGTTC GCCTGGTTTC CCTTACGCAC CGGCCTCGCC GGTCGAGGCG
CGTTTCTACC GGCCACCGCT GCCGGCAGGG CATGTGCCCC GGCCCAGGTT GTGCCAGCGC
CTCGAAGAGG GGCTGCAGGG GCGCCTGCTG CTGGTCTGTG CGCCTGCGGG GTTCGGCAAG
AGCTCCCTGG CCATCGAGTT TTGCGAGGGG TTGCCCGAGC ACTGGCACAG CCTGTGGCTG
GGGTTGAGCG AGCGCGATCA GGACCCTGGG CGCTTCCTCG AGCGCCTGCT GCAAGGGCTG
CAGCAGTTCT ACCCAGCTCT CGGTGAAGAA GCGCTCGGCC TGCTGAAAAT GCGTCAGCGC
CACCAGCCGT TTGCCTTCGA ACAGTGGCTC GATGGTCTGC TCGATGAGCT TGCCGACGAG
CTGGATGACG GTCAGCCGCT GTTGCTGGTG CTGGACGACT ATCACCTGGC GCAGGGGCCG
GTGCTCGACC GTTGCCTGCA GTTCTTCCTC AATCACCTGC CACCCGGCGT CCTGCTGCTG
GTGACCAGCC GCCAGCGGCC CGACTGGCAT CTGGCTCGCC TGCGTCTGTC GCGGCAGTTG
CTGGAGCTCA ACGAACAGGA CCTGAGGCTC ACCACCGGCG AGGTGGATGC CCTGCTGAGC
AGCCAGGGGG CTCGCCTGCA GAGGCCGCAG GTCGCCGATA TCCTGCAGCG CAGCGAGGGT
TGGGTAGCAG GCCTGCGCCT GTGGTTGCTG GCGGTCGAGG AGCTCGATGG CGATGCCCAG
GAGGACCTGG CGCTGCATGG CGGCGAGGGG CTGATCCGCG AGTACCTGCT CGAGGAAGTG
ATAGAGCGGC AGCCGCCCGA GGTGCAGCAG TTCCTCTATG AGACGGCCTG CCTGGAGCGC
TTCTGCGCCG GGCTCTGCGA TGCGGTGCGC GACAGCCATG ACAGCGCCGC GATCATCCGG
CAGTTGCAGG CCAATCAGGT ATTCCTGGTG CCGCTTGACG AGCAGGGCCA GTGGTTTCGT
TACCACCATC TGTTTTCCGA CCTGCTCAAC GCGCGATCGC TCGAGGGCCA GGTTCGCTCG
CAGGGCGGCG CTCATCTGCG CGCATGCCGC TGGTTCGCCG CGCAGGGCAT GCTGGACTCG
GCCATCGAGC AGGCATTGCT GGCCGGTCAG GCCGATGTCG CCGCCAGTCT GGTGCAGAAC
CTTTCCGAAG AGCAGATGCT GGCAGAGCAG AACATCGCCA TGTTGCTGCG CTGGAAGACC
AACCTGCCGG ACGACCTGCT GGCCAGTACG CCGCGCCTGA TCATGCTCTA TGGCTGGGCG
CTGGCACTGG CCTGCCAGCT GGATGCCGCG CAGGAGTTGC TGGAGCAGCT CGGACGTTTC
CTGCCTGCGG CCGATCCGCT TAGCCAGCGC AGCCTGCTGG CGCAGTGGCA GGCGCTCGAT
GGCGTCATCG CGCGAGGCCG AGGCGACGGC GCGCGGGCCG AGCAGCAATG CAGCGAGGCG
CTTGCCGGTC TGCCCGCGGA GCGCTATGGC CCCCATTTCA TGTGTCTGTC GACATTGGCC
AATCTGGCCA TGGTGCGTGG CGATCTGTGG CGAGCGCGAG GCCTCAATCG CGAGGCCCTG
GAGCTGGCGC AGCGCATCGA CAATCCGCTG TTCGAAGCGC TGGCGCATTA CGAGCGTGCT
CGCGTGCTGC AGGCGCGTGG CGAAGTGCTG CGGGCGTTGA GCGAGGTGCG CCAGGGGCTG
GCGCATCTGC AGGGCTTGCC TGTGCAGCGC AGCTATTCGG TGCGAGCACG TCTGACCCTG
TACGAGGGCT ATCTGCTCAG CCTGCGCCTG CAGCCGCGGG CGGCCGAGCA GCTGCAGGCC
GGTATCGCCG AGGCGAGAAG CTGTCGCGAC GTCGGTGTGC TGATCGGTTA CTGCGTGCTG
GCCTGCCTGG AAGGGCGCCG CGGTCGCCCC GCCGAGGCCT TTGCCCTCCT TGGTGAGGCG
GAGCGGCTGA TGCATGTATG GGACGTACCG GCGATCTACT ACCTGGCGAT GATCACCCTG
ATCAAGTGCG AGCTGTGGTT GCGTCAGGGG CAGGTCGAGC TGGCCGCCGC CTGGCTGCCG
CAACTGGCCG AAACCTATGG CGATCAGGGG CGCGCCCTGG CGCCGGAGTT CCATCCACAG
CTGGCCCTGC ACATCGACTT GCAGCAGGCC GCGTTGGAGC GTCTACAGGG TGATGTGGAA
GCCGCGGAGC GGCGTCTGCG CGCCTTGCAG CAGCAGGCCC AGGGGCTCGG TGGACAACTG
GTGGGGCTGA TGGCGCAGGC GCAGCTGGCT CAGCTGCTGC GGCAGACGGG CCGTGAGCGT
GAGGCGCAGC AGCAGCTCGA CGGCTGCCTG GAGGTCGCCC AGGGCGGTGC TCTGCTGCCG
TTCGTCGAGC TGCTCGAGCA TCAGCCGCAG TGGCTGCGCG AGCGTTTGCA GTTGCGTCCT
GCTTGCCCGC AGCGCGATGC GCTGCTCGCC CAGTTGCCGG CCGCTCGTGA GGCGGACGAG
GACGTGGCGC CGGAGGAGAG CGGTCCGACG GAAAAGCTCA GCGGCCGTGA GATGGCCGTA
CTGCAGCTGA TCGCGCGCGG CTGTTCCAAT CAGGAGATCA GCGAGCGCCT GTTCATCTCC
CTGCACACGG TCAAGACCCA CGCCCGCCAC ATCAACAGCA AGCTCGGCGT CGAGCGGCGC
ACGCAGGCGG TGGCGCGGGC CAAGGGCCTC GGCCTACTGC GCTGA
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| Protein sequence | MTDLSRSPGF PYAPASPVEA RFYRPPLPAG HVPRPRLCQR LEEGLQGRLL LVCAPAGFGK
SSLAIEFCEG LPEHWHSLWL GLSERDQDPG RFLERLLQGL QQFYPALGEE ALGLLKMRQR
HQPFAFEQWL DGLLDELADE LDDGQPLLLV LDDYHLAQGP VLDRCLQFFL NHLPPGVLLL
VTSRQRPDWH LARLRLSRQL LELNEQDLRL TTGEVDALLS SQGARLQRPQ VADILQRSEG
WVAGLRLWLL AVEELDGDAQ EDLALHGGEG LIREYLLEEV IERQPPEVQQ FLYETACLER
FCAGLCDAVR DSHDSAAIIR QLQANQVFLV PLDEQGQWFR YHHLFSDLLN ARSLEGQVRS
QGGAHLRACR WFAAQGMLDS AIEQALLAGQ ADVAASLVQN LSEEQMLAEQ NIAMLLRWKT
NLPDDLLAST PRLIMLYGWA LALACQLDAA QELLEQLGRF LPAADPLSQR SLLAQWQALD
GVIARGRGDG ARAEQQCSEA LAGLPAERYG PHFMCLSTLA NLAMVRGDLW RARGLNREAL
ELAQRIDNPL FEALAHYERA RVLQARGEVL RALSEVRQGL AHLQGLPVQR SYSVRARLTL
YEGYLLSLRL QPRAAEQLQA GIAEARSCRD VGVLIGYCVL ACLEGRRGRP AEAFALLGEA
ERLMHVWDVP AIYYLAMITL IKCELWLRQG QVELAAAWLP QLAETYGDQG RALAPEFHPQ
LALHIDLQQA ALERLQGDVE AAERRLRALQ QQAQGLGGQL VGLMAQAQLA QLLRQTGRER
EAQQQLDGCL EVAQGGALLP FVELLEHQPQ WLRERLQLRP ACPQRDALLA QLPAAREADE
DVAPEESGPT EKLSGREMAV LQLIARGCSN QEISERLFIS LHTVKTHARH INSKLGVERR
TQAVARAKGL GLLR
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