| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3449 |
|---|
| Symbol | |
|---|
| ID | 5105919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3805675 |
|---|
| End bp | 3806484 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504703 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001188931 |
|---|
| Protein GI | 146308466 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.413551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTTT CACCCAACGC CATGGGGCCG CGCCTGCGCG TCGGCCTCTA CCTCACCACG
GGGGCCATCG CCGCCTTCCT GCTGCTGCCG ATCGTGTTCA TCGTGCTGCT GTCGTTCGGC
TCGTCGCAGT GGCTGGTGTT CCCGCCGCCG GGCTGGACGC TGAAATGGTA CGAGCAGTTT
TTCGCCAACG TGGAGTGGAT GGAGTCGGCC TATACCAGCC TCAAGGTCGC GCTGCTGACC
ACCCTTTGCG CCGTGGCCCT CGGCCTGCCC AGCGCCTTCG CCCTGGTGCG CGGCAGGTTC
CCCGGTCGGG AGTTGCTCTA CGCCCTGTTC ACCCTGCCGA TGATCGTGCC GCTGGTGATC
ATCGCCGTTG CCATCTACGC CCTGTTCCTC AAGCTGGGCT ACACCGGCAC GCTGTTCGCC
TTCGTGGTCA GCCACGTGAT AGTGGCCCTG CCCTTCACCA TCATTTCCAT CATCAACTCG
CTGAAACTGT TCGACCAGTC GATCGAGGAC GCCGCCGTGA TCTGCGGCGC CTCGCGCCTG
CAGGCGGTGA TCAAGGTGAC CTTCCCGGCC ATCCGCCCCG GCATGGTGGC CGGCGCGCTG
TTCGCCTTCC TGGTGTCATG GGACGAGGTG GTGCTGAGCG TGATGATGGC CAGCCCGAGC
CTGCAGACCC TGCCGGTGAA GATGTGGACC ACCCTGCGCC AGGACCTGAC GCCGGTAATC
GCAGTAGCCT CGACCCTGCT GATCGCCCTG TCGATCCTGA TCATGCTGAT CGCCGCCGCC
TTGCGTCGGC GCAACGAACC CAGCGCCTGA
|
|---|
| Protein sequence | MLLSPNAMGP RLRVGLYLTT GAIAAFLLLP IVFIVLLSFG SSQWLVFPPP GWTLKWYEQF
FANVEWMESA YTSLKVALLT TLCAVALGLP SAFALVRGRF PGRELLYALF TLPMIVPLVI
IAVAIYALFL KLGYTGTLFA FVVSHVIVAL PFTIISIINS LKLFDQSIED AAVICGASRL
QAVIKVTFPA IRPGMVAGAL FAFLVSWDEV VLSVMMASPS LQTLPVKMWT TLRQDLTPVI
AVASTLLIAL SILIMLIAAA LRRRNEPSA
|
|---|
| |