| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3301 |
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| Symbol | |
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| ID | 5105774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3644026 |
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| End bp | 3645000 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504558 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001188786 |
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| Protein GI | 146308321 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTCA AACGCAAGCT GCTTCTGGCC ACACTTCCGC TAGCCCTCGG CCTGTCTTCC
CTGGTGCAGG CCGAGGTGAC CCTGAAGATC GCCGAGATCC ACCCCGCCGG CTACCCCACC
GTGGTGGCCA TGGAGAACCT GGGCAAGAAG CTGGAGGCGG CCACCAATGG CGAGATCAAA
TCGCGCATGT TCGCCGGTGG CGTACTCGGC TCGGAGAAGG AAGTGATCGA GCAGACCCAG
ATCGGCGCCG TGCAGCTGAC CCGCGTCAGC CTCGGCTCGG TGGGCCCGGT GGTGCCGGCC
ACCAACGTGT TCAACATGCC CTTCGTGTTC CGCGACGTCG ACCATATGCG CAAGGTGGTC
GATGGCGAGA TCGGCCAGGA AATCCTCGAC GCCATCACCA ACTCCGACTT CAACATGGTC
GGCCTGGCCT GGATGGAAGC CGGCAGCCGC AGCCTCTACA CCAAGAAGCC GGTGCGCAGC
CTGGAAGACC TCAAGGGCAT GAAGATCCGC GTGATCGGCA ACCCGCTGTT CATCGACACC
CTCAACGCCA TGGGCGCCAA CGGCATCGCC ATGGACACCG GCGAGATCTT CAGCGCCCTG
CAGAGCGGCG TGATCGACGG CGCCGAGAAC AACCCGCCGA CCCTGCTCGA GCACAACCAC
TTCCGTGCCG CCAAGTACTA CACCCAGACC CATCACCTGA TCCTCCCCGA GCCGCTGCTG
ATGTCCAAGA CCACCTGGAA CAAGCTCACC CCCGAGCAGC AGGAACTGGT CAAGAAGCTG
GCCAAGGAAG CCCAGCTGGA AGAGCGCGAC CTGTGGATCG CCAAGGAAAA CGCCAGCAAC
GAGAAGCTCA AGGCCGAAGG CGTCGAGTAC ATCGAGGTCG ACACCAAACC CTTCTACGAC
GCCACCGCCC CGGTCCGTGA GAAGTACGGC GCGCAGTTCG CCGAACTCAT CCAGCGCATC
GAAGCCGTTC AGTAA
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| Protein sequence | MNLKRKLLLA TLPLALGLSS LVQAEVTLKI AEIHPAGYPT VVAMENLGKK LEAATNGEIK
SRMFAGGVLG SEKEVIEQTQ IGAVQLTRVS LGSVGPVVPA TNVFNMPFVF RDVDHMRKVV
DGEIGQEILD AITNSDFNMV GLAWMEAGSR SLYTKKPVRS LEDLKGMKIR VIGNPLFIDT
LNAMGANGIA MDTGEIFSAL QSGVIDGAEN NPPTLLEHNH FRAAKYYTQT HHLILPEPLL
MSKTTWNKLT PEQQELVKKL AKEAQLEERD LWIAKENASN EKLKAEGVEY IEVDTKPFYD
ATAPVREKYG AQFAELIQRI EAVQ
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