| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2957 |
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| Symbol | |
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| ID | 5107675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3281453 |
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| End bp | 3282652 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504215 |
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| Product | peptidase M42 family protein |
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| Protein accession | YP_001188444 |
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| Protein GI | 146307979 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1363] Cellulase M and related proteins |
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| TIGRFAM ID | [TIGR03106] hydrolase, peptidase M42 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.705814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.012913 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACAGA TACCCGAACC CGACCTCGAC TATATGCAGA AGGTACTGCT GGAGATGCTC
GCCATCCCCA GCCCCACCGG TTTCACCGAC ACCATCGTGC GCTACGTCGC CGAGCGCCTC
GAAGAGCTGG AAATTCCCTT CGAGCTGACC CGCCGCGGCA CCATCCGCGC CACCCTGCGC
GGTCGTCAGA GCGAGTACGA ACGCTTCGAT CGTGCGGTTT CCGCGCACCT GGACACCATC
GGCGCCATCG TCCGCGAGAT CAAGGACAAC GGCCGCCTCG GCCTGGCCCC CGTGGGCTGC
TGGTCGAGCC GTTTCGCCGA GGGCAGCCGG GTCAGCCTGT TCACCGACCA CGGTGTGATC
CGCGGCAGCG TGCTGCCGCT GATGGCCTCC GGGCACGCCT TCAACACTGC GGTCGACACC
CTGCCGGTGA GCTGGGATCA CGTCGAACTG CGCCTGGATG CCTACTGCGC CACCCGCGCC
GACTGCGACG CCCTGGGCAT ATCGGTGGGC GATTTCGTCG CCTTCGACCC GCTGCCGGAG
TTTTCCGAAA GCGGCCACAT CAGCGCCCGC CACCTCGACG ACAAGGCCGG CGTCGCCGCC
CTGCTGGCCT CGCTCAAGGC GATTCACGAT CACGGCCTGC AACCGCTGAT CGACTGCCAC
CCGCTGTTCA CCATCACCGA GGAAGTCGGC TCCGGCGCCG CCGCCGCCCT GCCCTGGGAC
GTCAGCGAGT TCGTCGGCAT CGACATCGCC CCGGTCGCCC CCGGCCAGCA ATCGAACGAG
CATGCCGTCA GCGTGGCCAT GCAGGATTCG GGCGGGCCCT ATGACTATCA TCTGTCGCGC
CAGTTGCTGC GCCTGGCCGC CGAGCAGGAA GTGCCGGTGC GGCGCGACCT GTTCCGCTAC
TACCACAGCG ACGCGCAGTC GGCGGTGGCC GCCGGCCACG ATATCCGTAC TGCGCTGCTG
GCCTTCGGCT GCGACGCCAC CCATGGCTAC GAGCGCACCC ATATCGACAG CCTCAAGGCC
CTCAGCCGCC TGCTCACCGC CTACATGATG AGCCCGCCGG TATTCGCCAG CGATGCCCAG
CCGGCGCAAG GTTCGCTGGA GCGCTTCAGC CATCAGCTGG AGCACGATGC GCAGATGGAA
AGCGAGACAC GCGTTCCACC TGTGGACAGT CTGCTCGGCC AGCACGATCG GGACGCTTGA
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| Protein sequence | MQQIPEPDLD YMQKVLLEML AIPSPTGFTD TIVRYVAERL EELEIPFELT RRGTIRATLR
GRQSEYERFD RAVSAHLDTI GAIVREIKDN GRLGLAPVGC WSSRFAEGSR VSLFTDHGVI
RGSVLPLMAS GHAFNTAVDT LPVSWDHVEL RLDAYCATRA DCDALGISVG DFVAFDPLPE
FSESGHISAR HLDDKAGVAA LLASLKAIHD HGLQPLIDCH PLFTITEEVG SGAAAALPWD
VSEFVGIDIA PVAPGQQSNE HAVSVAMQDS GGPYDYHLSR QLLRLAAEQE VPVRRDLFRY
YHSDAQSAVA AGHDIRTALL AFGCDATHGY ERTHIDSLKA LSRLLTAYMM SPPVFASDAQ
PAQGSLERFS HQLEHDAQME SETRVPPVDS LLGQHDRDA
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