| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2949 |
|---|
| Symbol | |
|---|
| ID | 5107667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3270674 |
|---|
| End bp | 3271630 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504204 |
|---|
| Product | TRAP transporter solute receptor TAXI family protein |
|---|
| Protein accession | YP_001188436 |
|---|
| Protein GI | 146307971 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.0733999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTAG CCAAGCGTCT TGGCCTACTC GTCGCCGCCG CGATCCTGGT CAACAGTCCC
AACGCTCACG CCACCCCCAC CACGATCAAC ATCCTCACCG GTGGTACCAG TGGCGTCTAT
TACCCGTTGG GCCTGAGCCT GTCGGAGCTT TACAGCCAAC GCATCGAAGG CTCCACCACC
AGCGTGCGCG CCACCAAGGC CTCGGTGGAG AACCTCAACC TGCTGCAGAT TGCCCGCGGC
CAACTGGCCT TCGCTTTGGG CGACTCGGTC GCCGACGCCT GGAAAGGCGA CGAGGACGCC
GGCTTCCGGG CCCCGCGTGA CCGCCTGCGC GCCATCGCCG GGATCTATCC GAACTACATC
CAGATCGTCG CCAGCCAGGC ATCGGGCATC CACAGCCTCG AGGACCTGCG CGGCAAGCGA
ATTTCCGTCG GGGCGCCGCG CTCGGGCACC GAACTCAATG CCAGGGCCAT CTTCAGAGCC
GCAGGCCTGA GCTACAAGGA CATGGGCCAG GTCGAGTTCA AGCCCTACGC CGAGTCGGTC
GAGCTGATCG AAAAGGGCCA GCTGGACGCC ACCCTGCAGT CGGCGGGCCT TGGCATGGCA
GCGATTCGCG AACTGGCCGA GCGCGTGCCC ATCATCTTCG TCGCCATTCC GGAGCAGGTG
GTGGCACGTA TCGGCAGCAG CGCCTATCAG TCGGGCATCA TTCCCGCCGG CACCTACAGG
GGCCAGGCCA ACGACGTGAC GACGGCGACC ATCACCAACG TTCTGGTGAG CCAGACCAGC
GTTTCCGACG CCGTGGCCTA TCAGATGACC AAGTTGCTCT TCGAGAATCT CGATCGTCTG
GCCGAAGCGC ACCCGGCCGC CAAGGACATC AGACTGGAGC GGGCGACCGA TGGCCTGCCG
ATTCCCCTGC ATCCCGGGGC CGAACGCTTC TATCGCGAGG TTGGCGTGCT CAGATAG
|
|---|
| Protein sequence | MRLAKRLGLL VAAAILVNSP NAHATPTTIN ILTGGTSGVY YPLGLSLSEL YSQRIEGSTT
SVRATKASVE NLNLLQIARG QLAFALGDSV ADAWKGDEDA GFRAPRDRLR AIAGIYPNYI
QIVASQASGI HSLEDLRGKR ISVGAPRSGT ELNARAIFRA AGLSYKDMGQ VEFKPYAESV
ELIEKGQLDA TLQSAGLGMA AIRELAERVP IIFVAIPEQV VARIGSSAYQ SGIIPAGTYR
GQANDVTTAT ITNVLVSQTS VSDAVAYQMT KLLFENLDRL AEAHPAAKDI RLERATDGLP
IPLHPGAERF YREVGVLR
|
|---|
| |