| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2947 |
|---|
| Symbol | |
|---|
| ID | 5107665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3267796 |
|---|
| End bp | 3268740 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640504202 |
|---|
| Product | 1-aminocyclopropane-1-carboxylate deaminase-like protein |
|---|
| Protein accession | YP_001188434 |
|---|
| Protein GI | 146307969 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.896331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.271855 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTCCGG ATTTTCCCGA CTGGCGCCCG CAGGCGCCGC TGCAGCCGCT GCGCTTTAAC
TGGCTGGACG CCGCTGGCGT CGAGCTGGCC TGTCTGCGTC TGGATCTGAT CGACCCGCTG
ATCTGCGGCA ACAAGTGGTT CAAGCTCGCT CCACATCTGC GTGAGGCCGT CGCTGCCGGC
GCGCGCGGGC TGATCAGCCT GGGCGGCGCT CATTCCAACC ATCTGCATGC CCTGGCCGCG
GCGGGCAGGC GTTTCGGTTT TCCAACCGTC GGCCTGCTGC GCGGCGAGCC GCAGCAGACC
CCGACCGTCA GTGATCTGCA GGCCATGGGC ATGCACCTGC ATTGGCTGGG TTATGGCGGC
TACCGTGCGC GCCACCAGGC GGACTTCTGG CAAGGCTGGT TGCAGCGTTA CCCCGGGTTT
CATCCGGTCA ACGAGGGCGG GCTGGGGCTG GCGGCTGCCC TGGGCTGCGC CGAGCTGGTG
GCGATGGCTC AGGCACAACT GGCTGCTCTC GGCTGGTCGG ACTTCGATGG CTGGTGGCTG
GCCGCGGGCA CCGGCACCAC GCTGGCCGGG CTGGTTCTCG GCGAGCAGGG GCGGCGTGCC
GTTCATGGCG CCTTGGCGGT GCCCGCCGGT CACGGCGTAG CCGAACAGGT GGCGGCGCTG
TTGCAGCAGG CGGGGCGGCC CGATCAGGGC TATCGGCTGA TCGAGGCGGC GCGGGGCGGT
TTTGCGCGCA TGGATGATGA GCTGCGTGAC TTCATCAATG CCAGCGAGTC GGCCAGCGGT
CTGCCGCTGG AGCCTGTGTA CACCGGCAAG GCCCTGATGG CATTGCGCGA TTTCTGTGAC
AATGGCCACC TTGCGCGCGG CTGCCGGCTG ATCTTCGTTC ATACTGGCGG TCTGCAGGGG
CGTCGTGCGC TGATGGGTGT CGATGCCAAC TACACTCAGG TCTGA
|
|---|
| Protein sequence | MAPDFPDWRP QAPLQPLRFN WLDAAGVELA CLRLDLIDPL ICGNKWFKLA PHLREAVAAG
ARGLISLGGA HSNHLHALAA AGRRFGFPTV GLLRGEPQQT PTVSDLQAMG MHLHWLGYGG
YRARHQADFW QGWLQRYPGF HPVNEGGLGL AAALGCAELV AMAQAQLAAL GWSDFDGWWL
AAGTGTTLAG LVLGEQGRRA VHGALAVPAG HGVAEQVAAL LQQAGRPDQG YRLIEAARGG
FARMDDELRD FINASESASG LPLEPVYTGK ALMALRDFCD NGHLARGCRL IFVHTGGLQG
RRALMGVDAN YTQV
|
|---|
| |