| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2907 |
|---|
| Symbol | |
|---|
| ID | 5107625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3216976 |
|---|
| End bp | 3218322 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504162 |
|---|
| Product | succinylarginine dihydrolase |
|---|
| Protein accession | YP_001188394 |
|---|
| Protein GI | 146307929 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3724] Succinylarginine dihydrolase |
|---|
| TIGRFAM ID | [TIGR03241] succinylarginine dihydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.254862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.617439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCT ATGAAATGAA CTTCGACGGC CTGGTGGGGC CGACCCACAA CTACGGTGGG
CTGTCCTACG GCAACGTCGC ATCGCAGAGC AACAGCCAGG CGATCTCCAA TCCGAAGGAG
GCCGCCAAGC AGGGTCTGGC GAAGATGAAG GCGCTCATGG ACATGGGCTT CAAGCAGGGC
GTTCTGGCCC CGCAGGAGCG TCCGGATGTG GCCGCGCTGC GCCGTCTGGG CTTCACCGGC
AGCGATCCCG AGGTGATTGC CCGTGCCGCG CGCGAGGCCA TGCCGCTGCT GGTGGCGAGC
TGCTCGGCGT CGAGCATGTG GACGGCCAAC GCCTGCACCG TCAGCCCCAG CGCCGATACG
GCCGACGCTC GCGTGCATTT CACGGCCGCC AACCTCAACT GCAAGTTCCA CCGCTCGATC
GAGCATCCGA CCACCAGTCG CGTGCTGCAG GCCATGTTCG CCAGCCAGGA GCATTTCGCG
CATCACCCGG CCTTGCCGGC GGTCAGTCAG TTCGGCGACG AGGGCGCGGC CAACCACACG
CGCTTCTGCA AGAGCTATGG CGAGCCTGGC GTGGAGTTCT TCGTCTACGG CCGCAGCGCC
TTCGACAGCC GCTACCCGGC ACCGGCACGT TATCCGGCGC GGCAGACCCT GGAGGCCAGC
CAGGCGGTGG CGCGCCTGCA CGGGCTGAGC GAGGAGGGCG TGGTGTACGC CCAGCAGAAC
CCGGCGGTGA TCGACCAGGG CGTGTTCCAC AACGACGTGA TCGCCGTGGG CAACGGCGAA
GTGCTGTTCT ATCACCAGGA CGCCTTCCTC GACACCGACA AGGTGCTGGG CGAACTGGGT
AGCAAGCTGG CCGGTCGTGG CGGCAACTTC CAGGCGGTCT GCGTGCCCAA CAGCGCAGTG
AGCGTGGAGG ATGCGGTCAA GTCCTACCTG TTCAACAGCC AGCTGCTGAC CCGCGCCGAC
GGCAGCATGC TGCTGGTGGT CCCGGAGGAG TGCCGTAACA ACGCCAGCGT CTGGCGCTAC
CTGGAGCAGC TGACCGCCGG CAATGGTCCG ATCCGTGAAG TACGGGTGTT CGACCTCAAG
CAGAGCATGC AGAACGGCGG TGGCCCGGCC TGTCTGCGCC TGCGCGTGGC GCTCAAGGAG
CAGGAACTGG CCGCGGTCAA CCCGGGGGTG GTGATGAGCC TCGAATTGCA TGACAGGCTG
GTGGCCTGGG TCGACAAGCA TTACCGTGAC CGTCTCAGCG AGGCCGATCT GGCCGATCCG
CAATTGCTGA TCGAGTGCCG CACGGCATTG GATGAACTGA CGCAGATCCT TAAACTGGGC
TCGGTCTATC CTTTCCAGAT GACCTGA
|
|---|
| Protein sequence | MTAYEMNFDG LVGPTHNYGG LSYGNVASQS NSQAISNPKE AAKQGLAKMK ALMDMGFKQG
VLAPQERPDV AALRRLGFTG SDPEVIARAA REAMPLLVAS CSASSMWTAN ACTVSPSADT
ADARVHFTAA NLNCKFHRSI EHPTTSRVLQ AMFASQEHFA HHPALPAVSQ FGDEGAANHT
RFCKSYGEPG VEFFVYGRSA FDSRYPAPAR YPARQTLEAS QAVARLHGLS EEGVVYAQQN
PAVIDQGVFH NDVIAVGNGE VLFYHQDAFL DTDKVLGELG SKLAGRGGNF QAVCVPNSAV
SVEDAVKSYL FNSQLLTRAD GSMLLVVPEE CRNNASVWRY LEQLTAGNGP IREVRVFDLK
QSMQNGGGPA CLRLRVALKE QELAAVNPGV VMSLELHDRL VAWVDKHYRD RLSEADLADP
QLLIECRTAL DELTQILKLG SVYPFQMT
|
|---|
| |