| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2829 |
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| Symbol | |
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| ID | 5107744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3106892 |
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| End bp | 3108367 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504079 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001188316 |
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| Protein GI | 146307851 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.280234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00432701 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGGCGTG AAACCAAAAT CCTGTTGATC GACGACAATG CTGAGCGCCG CCATGAGCTG
GCGATCATTC TGAATTTTCT CGGGGAAGAT CATCTCGCCT GTAACAGTCA GGACTGGCGC
AACGTGGTTG CCGAGCTCAG CTCCAGCCGC GAGGTGCTCA ACGTGCTGTT GGGCGACGTC
GAATCCAAGG GCGGCGCGCT GGAACTGACC AAGCAGATCG CGGGTTGGGA TGAGTTTCTG
CCACTGCTGA CGGTCGGTGA GTCCAGTATT CACGAGTGGC CGGAGGATCT GCGCCGGCGC
GTGCTGGCCA CGCTGGAAAC ACCGCTCAGC TACAACAAGC TGCTCGATTC CCTGCATCGT
GCCCAGGTCT ACCGCGAGAT GTATGACCAG GCCCGTGATC GTGGGCGGCA GCGCGAGCCC
AACCTGTTCC GCAGTCTGGT CGGCACCAGC CGAGCCATCC AGCAGGTGCG GCAGATGATG
CAGCAGGTGG CCGACACCGA GGCCAGCGTG CTGATCCTTG GCGAGTCTGG AACCGGCAAG
GAAGTGGTGG CGCGTAACCT GCACTATCAC TCCAAGCGTC GCGAGGCACC GTTCGTGCCG
GTCAACTGCG GTGCCATTCC AGCCGAGCTG CTGGAAAGCG AGCTGTTCGG CCACGAGAAA
GGGGCCTTTA CCGGTGCCAT CACCAGCCGG GCTGGGCGCT TCGAGCTGGC CAACGGCGGT
ACGCTGTTCC TCGACGAAAT CGGCGACATG CCGCTGCCGA TGCAGGTCAA GTTGCTGCGC
GTGCTGCAGG AGCGCACCTT CGAGCGTGTG GGCAGCAACA AGACGCAAAC GGCCGACGTG
CGCATCATCG CCGCTACGCA CAAGAACCTG GAAAAGATGA TCGAGGAGGG CAGCTTCCGT
GAGGACCTGT ACTACCGCCT CAACGTCTTC CCCATCGAGA TGGCGCCGCT GCGCGAGCGC
ATCGAAGACA TTCCGCTGTT GATGAACGAG CTGATCTCGC GCATGGAGCA CGAAAAGCGC
GGCTCCATCC GTTTCAACTC CGCCGCCATC ATGTCGCTGT GCCGCCATGA CTGGGCGGGC
AACGTGCGCG AGCTGGCCAA CCTGGTGGAG CGCATGGCGA TCATGCATCC CTACGGTGTG
ATCGGTGTTG GCGAGCTGCC GAAGAAATTC CGTCATGTCG ATGACGAGGA TGAACAGCTT
GCCGCCAGCC TGCGCGACGA GATGGAAGAA CGTGCCGCGA TCATGGCCGG GCTGCCGGGC
CTGGATACGC CTGCCATGTT GCCGCCCGAG GGACTCGATC TGAAGGACTA CCTCGGCAAC
CTGGAGCAGG GGCTCATCCA GCAGGCGCTG GATGATGCCG GCGGTGTGGT GGCGCGTGCC
GCCGAGCGCC TGCGCATTCG CCGTACCACC CTGGTGGAGA AGATGCGCAA GTACGGCATG
AGCCGTCGCG ACGAGGAAGG TCAGGAAGAA GATTGA
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| Protein sequence | MWRETKILLI DDNAERRHEL AIILNFLGED HLACNSQDWR NVVAELSSSR EVLNVLLGDV
ESKGGALELT KQIAGWDEFL PLLTVGESSI HEWPEDLRRR VLATLETPLS YNKLLDSLHR
AQVYREMYDQ ARDRGRQREP NLFRSLVGTS RAIQQVRQMM QQVADTEASV LILGESGTGK
EVVARNLHYH SKRREAPFVP VNCGAIPAEL LESELFGHEK GAFTGAITSR AGRFELANGG
TLFLDEIGDM PLPMQVKLLR VLQERTFERV GSNKTQTADV RIIAATHKNL EKMIEEGSFR
EDLYYRLNVF PIEMAPLRER IEDIPLLMNE LISRMEHEKR GSIRFNSAAI MSLCRHDWAG
NVRELANLVE RMAIMHPYGV IGVGELPKKF RHVDDEDEQL AASLRDEMEE RAAIMAGLPG
LDTPAMLPPE GLDLKDYLGN LEQGLIQQAL DDAGGVVARA AERLRIRRTT LVEKMRKYGM
SRRDEEGQEE D
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