| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2718 |
|---|
| Symbol | |
|---|
| ID | 5107869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2980614 |
|---|
| End bp | 2983409 |
|---|
| Gene Length | 2796 bp |
|---|
| Protein Length | 931 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503962 |
|---|
| Product | Tfp pilus assembly protein FimV-like protein |
|---|
| Protein accession | YP_001188205 |
|---|
| Protein GI | 146307740 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.513981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0374909 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGGG TTCGCAAACT GGTGCTGGCA ATTGCAGCGG CTTCGGCGCT GTCTTCCGGT
ATGGCGCATG CGCTGGGGTT GGGTGAAGTC ACCCTGCAGT CCTCGCTGAA TCAGCCGTTG
GTAGCGGAAA TTGAATTGCT GGAGGTGCGC GACCTGGCCT CCAATGAGGT GATTCCCAGC
CTCGCGTCTC CTGAAGAATT CGTCAAGGCA GGGGTTGATC GTCAGTACTT CCTGACCGAC
CTGAAGTTCA CGCCGGTACT CAAGCCCAAT GGCAAGAGTG TGATTCGTGT CACTTCGAGC
AAGGTTGTAC GCGAACCCTA CCTTAACTTC CTGGTGGAAG TGCTCTGGCC GAATGGCCGG
TTGCTGCGCG AATACACCCT GCTGCTCGAC CCGCCGCTCT ATTCCCCGCA GACCACCGTG
GCCGCTGCGC CGCAACTGCC GATCGCTGCC CCGGCTCCGC GTCCTGCCGC CGCGCCTGCA
ACTGCACCGG CCGCCGCCCC GCGCCCGGCC GCTCCGGCGC CAGCCTCTCG TGCCATCGCT
GGCAATGAAT ACAGAACCAC GGCCAACGAC ACCCTCTGGG AAATTGCCCA GCGCGTCGGT
GGCGGCTCGG TCAATCAGAC CATGCTGGCT ATCCAGGATC TGAATCCGGA TGCCTTTATT
GACGGCAACA TCAACCGCAT GAAGAGCGGC CAGGTGCTGC GTCTGCCGGA CGAGCAGCAG
ATTCGCCGTC GTAGCAATGC CGAAGCTGTC GCCCAAGTCG CCGAGCAGAA CGCCGCCTGG
CGTGAAGGTC GCGCCGTTGC CTCGCGTCAA CTGGATGCCA CCCGCCGCAC TACTGCGGGC
GCTGCCCCGG CAACTGCCGA GACGGGCGAC AACCTGAAGC TGGTTGCTGC CGATTCTGGC
CAGGCTACCC GCGGCAGCGA TACCGGAGCA GCAGGCAGCA AGGCCCTGGC CGACAAGCTG
GCGGTGACTC AGGAAAGCCT CGATTCGACC CGTCGTGAAA ATGCCGAGCT GCAGAGCCGT
GTCAGCGATC TGCAGAGCCA GCTGGACAAG CTGCAGCGAC TGATCGAGCT CAAGGACAGC
CAGTTGGCCA AGTTGCAGGC CGATATGGCA GCCACGCCCG CTGCGCCCGA AGCGCCTGCG
GAGCCCGCGG CTCCAGTCGC CGAGCCGGAA ACTGCGCCGC CTGCGGCGCA AACCCCGACG
CCGCCTGTGT CGCCGCCCGA AGAGGCGGCG GCTCCGGACT ACAACTACTC CGATGAACCG
GCGGCGCCTG TCGAAGACAG CGCCGCTGCC GCCCCCCAAC AGCCGGCCAG TGAGCCGGCT
GATGTCGTTG CACCGTCCGC TCCGGCCAAG CCGGCCGAGC CCGCCAAGCC TGCTGCTCCG
GCGCCCGCTC CGGCTCCGGC TCCGCAGAGC TTCATCGACG ATCTGCTGGC CAATCCCATG
ACCCTGGGCC TGGCCGGTGG CGGCGCTTTG CTGCTGTTGC TGGTTGGCCT GATGGCCCTG
TCGCGTCGTA ATGCGATGAA GGAAGCCGAG TTGCAGGAGG AGCTGGCTGA GGACATGTCT
CAGGACGAAG CCTTCGCATC CGATCTGGAC ATGCCGGAAG ACAGTTTCGC TGGTCTCGAG
GACGAGTCGA CCACCGCCGC ACCGGCTGGC GAAGAGCGCG TTACCGCCCA GACCGGCGAC
GCCCTCGGCG AGGCGGACAT CTACATTGCC TACGGCCGCT TCAATCAGGC TGCCGAGCTG
CTGCAGAACG CCATCAATGA CGAGCCGCAG CGCAGCGACC TGCGCCTGAA ACTGATGGAA
GTCTATGCCG AGCTGGGCGA CCGCGAAGGT TTTGCGCGCC AGGACAACGA GCTGCGCGAA
ATCGGTGGGG TCAATGCCGA GGCCGAGCAG CTGAAGTCCA AGTATCCGGC CATGGCGGCC
TTCGTCGGCG CTGGCAGCGT TGCTGCTGCA GCTGCCGATG ATCTGGGTGA GTTCAGCCTG
GACGATCTGA GCCTGGATGA GCCGAGCGCC GAAGCGCCGG CGGCAACCGG TGGTGATCTG
GACGATGCCT TCGACCTGAG TCTGGACGAT CTCGAGGCCG ATCTGGATCG GGACGTGCAG
GCCGCACAGG GTGACAGCGC TGCGCTGTCG CTGGATGACG ATCTGGACTT TGGCCTGGTC
GACGAGCCCA TCGCCCCGGC AGCCACCACT GCCGACGATC TGGACTTCGA TCTGGCGCTG
GATGATGACA AGGTCGAGCT GTCTCAGCCG ACTGAGGATC TTTCCGGCTT CAGCCTCGAT
CTGGACGAGC CGGCTGCTGC ATCCGAAGAG GCCGACGACT TCCTGCTCAG CCTCGATGAC
GATGTGACGC CTGCAGCCCA GCCGGCTGAC GAGCTGGCCG ACCTTGGTCT CGATCTGTCG
GAAGCTCCGG CCGCCGACCT CGATCTGCCG GCCGACTTCG ATCTGTCGCT GGATGACGAG
GCGCCGGCGC AGCCGGTCGC TGAGCCCGAC AGCTTCGCTG CGCAGCTGGA CGAAGTGACC
GCGGAACTGG ACCAGTTGGC TGGCGATCTC GAGCAGCCGG AGCCGGAAGT GGCCCCGCTG
GCATCGGGTG ACAACCTGGG CAGCGATCTG GAGGGGGACG ACGACTTCGA TTTCCTCTCC
GGGACCGACG AAACCGCGAC CAAGCTGGAT CTGGCGCGTG CCTACATCGA CATGGGCGAC
ACCGAAGGTG CACGCGACAT TCTCGATGAG GTGATCGCCG AGGGCAGCGA AGCCCAGCAG
CAGGAAGCAC GCGAGATGAT TGCCAAGCTG GTTTGA
|
|---|
| Protein sequence | MVRVRKLVLA IAAASALSSG MAHALGLGEV TLQSSLNQPL VAEIELLEVR DLASNEVIPS
LASPEEFVKA GVDRQYFLTD LKFTPVLKPN GKSVIRVTSS KVVREPYLNF LVEVLWPNGR
LLREYTLLLD PPLYSPQTTV AAAPQLPIAA PAPRPAAAPA TAPAAAPRPA APAPASRAIA
GNEYRTTAND TLWEIAQRVG GGSVNQTMLA IQDLNPDAFI DGNINRMKSG QVLRLPDEQQ
IRRRSNAEAV AQVAEQNAAW REGRAVASRQ LDATRRTTAG AAPATAETGD NLKLVAADSG
QATRGSDTGA AGSKALADKL AVTQESLDST RRENAELQSR VSDLQSQLDK LQRLIELKDS
QLAKLQADMA ATPAAPEAPA EPAAPVAEPE TAPPAAQTPT PPVSPPEEAA APDYNYSDEP
AAPVEDSAAA APQQPASEPA DVVAPSAPAK PAEPAKPAAP APAPAPAPQS FIDDLLANPM
TLGLAGGGAL LLLLVGLMAL SRRNAMKEAE LQEELAEDMS QDEAFASDLD MPEDSFAGLE
DESTTAAPAG EERVTAQTGD ALGEADIYIA YGRFNQAAEL LQNAINDEPQ RSDLRLKLME
VYAELGDREG FARQDNELRE IGGVNAEAEQ LKSKYPAMAA FVGAGSVAAA AADDLGEFSL
DDLSLDEPSA EAPAATGGDL DDAFDLSLDD LEADLDRDVQ AAQGDSAALS LDDDLDFGLV
DEPIAPAATT ADDLDFDLAL DDDKVELSQP TEDLSGFSLD LDEPAAASEE ADDFLLSLDD
DVTPAAQPAD ELADLGLDLS EAPAADLDLP ADFDLSLDDE APAQPVAEPD SFAAQLDEVT
AELDQLAGDL EQPEPEVAPL ASGDNLGSDL EGDDDFDFLS GTDETATKLD LARAYIDMGD
TEGARDILDE VIAEGSEAQQ QEAREMIAKL V
|
|---|
| |