| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2690 |
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| Symbol | |
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| ID | 5107841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2949584 |
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| End bp | 2950453 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503934 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001188177 |
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| Protein GI | 146307712 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.12909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.769713 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATATG ACTCTGTGTT CAAACCGGGC CTGTTCGCAG GCCAGACCAT CCTGGTCACC
GGCGGTGGCA GCGGCATCGG CCGCTGCGTG GCCCACGAGC TGGCCTATCT GGGTGCCCAT
GTGGTGCTGG TTGGGCGCAA GCAGGAAAAA CTGGAGAAAA CCTGCGCCGA AATCATCGAA
GACGGCGGCA GCGCCAGCCT GCACGCCTGC GATATCCGCG ACGAAGAGGC GGTGAAGGCC
ATGGTCAGCG CGGTGCTCGC GCAGCGCGGA CGCATCCATC ACCTGGTCAA CAACGCCGGC
GGCCAGTTTC CCGCGCCACT GATCGGCATC AACCAGAAAG GCTTCGAGAC CGTGGTGCGC
ACCAACCTGG TGGGCGGTTT TCTGGTGGCC AAGGAAGTCT TCCTGCAGAG CCTGAGCAAG
CACGGCGGGA GCATCGTCAA CATGCTCGCC GACATGTGGG GCGGCATGCC CGGCATGGGC
CATTCCGGCG CGGCACGGGC CGGCATGGAG AACTTCACCA AGACCGCCGC CTACGAGTGG
GGCCACGCCG GCGTGCGGGT CAACGCCGTG GCGCCGGGCT GGATCGCCTC CAGCGGCATG
GACACCTACC CCGAGTCGAT GAAGAACATG ATCCGCAACC TCAAGGATCA CGTGCCGCTG
CAACGCATCG GCAGCGAGTC CGAGGTGGCC GCCGCCATCG TCTTCCTGCT CAGCCCCGGC
GCCAACTTCA TCAGCGGCAA CACCATCCGC ATCGACGGTG CAGCCAGCCA GGGCACCCGT
GCCTGGACCC TGGGCAAGGC GAGAAACAGC GAGCCCTACA ACGGTTTCCC TCGGGCCTAC
CTGCCCGATG TACTGAAAGA TCAGGAGTAA
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| Protein sequence | MPYDSVFKPG LFAGQTILVT GGGSGIGRCV AHELAYLGAH VVLVGRKQEK LEKTCAEIIE
DGGSASLHAC DIRDEEAVKA MVSAVLAQRG RIHHLVNNAG GQFPAPLIGI NQKGFETVVR
TNLVGGFLVA KEVFLQSLSK HGGSIVNMLA DMWGGMPGMG HSGAARAGME NFTKTAAYEW
GHAGVRVNAV APGWIASSGM DTYPESMKNM IRNLKDHVPL QRIGSESEVA AAIVFLLSPG
ANFISGNTIR IDGAASQGTR AWTLGKARNS EPYNGFPRAY LPDVLKDQE
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