Gene Pmen_2686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2686 
Symbol 
ID5107837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2945101 
End bp2945892 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content61% 
IMG OID640503930 
Productextracellular solute-binding protein 
Protein accessionYP_001188173 
Protein GI146307708 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0129689 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.492762 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGGTGG GCGCCATCTG TCTGGTGCTC GCCGGCTCGC TGTCCGCCGC GGAAGTCGTC 
AAGGTAGGCG GCGCGCATTT CCCGCCTTAC GTGGTCAAGT CCAATCTGCA GGAATCCAGC
GGCCTGCTGC CACAGCTGCT CGAGGCACTC AATCGCGAGC AGAGCGAATA CCACTTCATC
ATGTTGCCCA CCGCCATCGT GCGCCGCTTC AGCGATCTGC AGCGCGGGCG TATCGATATG
GCGATCTTCG AGAACCCCGG TTGGGGCTGG CAGGATATCG ATGCCGATGC CGTCGACATG
GGCCTGGAGG ATGCGGAGCT GTTCGTTACC AGGAACGAGG AGCTGCGTGA TCAGCAATAT
TTCGAGCAGC TGCAGGGCAA GCGTCTGGCC CTGTACCGTG GTTATCACTA TGGCTTCGCC
GGCTTCAACA GCGACCCGGA ATACCTCACC CGCACCTTCA ATGCCAACCT CGGCCACTCC
CATGACAGCA ATCTGCTGAT GGTGCTGCGC GGTCGCGCCG ACATCGCTCT GGTGACCCGT
TCCAATCTCT ATGATTTTCT CGAGCGCAAC CGCGAGCATG GGCGGCAATT GCTGATTTCC
GATCGTATCG ATCAGGTCTA TCGCCACCAT GCGATGATCC GCGCCGGCGC GCCGATCAGT
CCCGAACGCT TCGCTGCGCT GCTCGAGCAG CTGCGTGCCA ATGGCGAGCT GGCGCGCATT
TTCTCGCCTT ACCGAATCGC CGTCATGCCA GTCGCAGCGG ATAGCTCAGC AGCAGAATAT
GCAGCAGATT GA
 
Protein sequence
MWVGAICLVL AGSLSAAEVV KVGGAHFPPY VVKSNLQESS GLLPQLLEAL NREQSEYHFI 
MLPTAIVRRF SDLQRGRIDM AIFENPGWGW QDIDADAVDM GLEDAELFVT RNEELRDQQY
FEQLQGKRLA LYRGYHYGFA GFNSDPEYLT RTFNANLGHS HDSNLLMVLR GRADIALVTR
SNLYDFLERN REHGRQLLIS DRIDQVYRHH AMIRAGAPIS PERFAALLEQ LRANGELARI
FSPYRIAVMP VAADSSAAEY AAD