13 homologs were found in PanDaTox collection
for query gene Pmen_2489 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_2489  hypothetical protein  100 
 
 
259 aa  502  1e-141  Pseudomonas mendocina ymp  Bacteria  normal  0.721538  normal  0.0767999 
 
 
-
 
NC_009720  Xaut_1716  hypothetical protein  45.98 
 
 
260 aa  185  7e-46  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.21992 
 
 
-
 
NC_007958  RPD_0970  hypothetical protein  44.89 
 
 
258 aa  181  8.000000000000001e-45  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.431239  normal 
 
 
-
 
NC_011981  Avi_7565  hypothetical protein  37.14 
 
 
262 aa  146  4.0000000000000006e-34  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6246  hypothetical protein  36.13 
 
 
512 aa  112  4.0000000000000004e-24  Spirosoma linguale DSM 74  Bacteria  normal  0.256275  normal 
 
 
-
 
NC_013037  Dfer_2077  hypothetical protein  37.89 
 
 
528 aa  104  1e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0447  hypothetical protein  38.32 
 
 
296 aa  94  2e-18  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.953487 
 
 
-
 
NC_009050  Rsph17029_3535  hypothetical protein  31.92 
 
 
284 aa  60.1  0.00000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2934  hypothetical protein  31.4 
 
 
286 aa  60.1  0.00000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.334803  n/a   
 
 
-
 
NC_013595  Sros_0309  hypothetical protein  32.39 
 
 
286 aa  56.2  0.0000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.858216  normal 
 
 
-
 
NC_009664  Krad_0407  hypothetical protein  27.59 
 
 
277 aa  50.1  0.00003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.126059  normal  0.0696554 
 
 
-
 
NC_009654  Mmwyl1_0486  hypothetical protein  28.82 
 
 
290 aa  49.3  0.00006  Marinomonas sp. MWYL1  Bacteria  normal  0.243748  normal 
 
 
-
 
NC_007802  Jann_0647  hypothetical protein  29.52 
 
 
283 aa  45.4  0.0008  Jannaschia sp. CCS1  Bacteria  normal  0.0913041  normal 
 
 
-
 
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