| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2485 |
|---|
| Symbol | |
|---|
| ID | 5107361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2748658 |
|---|
| End bp | 2749518 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640503729 |
|---|
| Product | pirin domain-containing protein |
|---|
| Protein accession | YP_001187973 |
|---|
| Protein GI | 146307508 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1741] Pirin-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.110651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC TGCAGTTGAT CCGCCCGCGC GCTGAGGACA TTTCCGGCCA ACCGATCCTG
CGCCCCCTGC CCTCGGCACG CTTTCGCAGC ATCGGCCCCT TCGTGTTCTT CGATCACATG
CTGGAGCAGG ACTACCCCGC CGGCAGCGGC TTGAACATCG CCCAACATCC GCATATCGGC
CTGTCCACCC TCACCTACCT GTTCGAAGGC CAGCTGCAGC ACAAGGACAG CCTGGGCTCC
GATCAGCTGG TCGGACCCGG CGACGTCAGC TGGATGACCG CAGGGCGCGC GGTGGCCCAT
GTCGAGCGCA CGCCGCCCGA ACAGCTCGGG CAGAACAAGC GGGCCCACGG CCTACAGGTC
TGGCTCGCGC TGCCGGAGAC CGAAGAACAG TGCGATCCGG CCTACAGCTA CCACCCTGCC
GCGTCGCTGC CGCGCAGCGA TGCCATGGGC GTGCAGATCA CCCTGATCGC CGGCAGTGGC
TTCTGCCTCG AATCGCCAGT ACCGGTACGT TCGCCGACGC TCTACGCCGA GCTGCGCCTG
AGCGCCGGCG CCAGCCTGCT GATCCCGGTC GAGCACAGCG AACGCGCCCT GTATCTGATC
GACGGCGAAG CCGAACTCGA TGGCGAAACC CTGCCCCGCC ACACCATGGC GGTGATCCCA
GCGGGTGAAA CGCCACTGCT CAGCGCCTGC GGCGAATGCC ACCTGGCGCT GATCGGCGGC
GAACCCATCG GCCCACGGCG AATGAACTGG AACTTCGTCG CCAGCACCCC CGAACTGATC
GACCAGGCCC GCCAGCGCTG GGCCGCAGGC GACTGGCCGC AGGTCCCCGG CGAAACCACG
CGCATCGAAC TGCCGCGCTG A
|
|---|
| Protein sequence | MSELQLIRPR AEDISGQPIL RPLPSARFRS IGPFVFFDHM LEQDYPAGSG LNIAQHPHIG
LSTLTYLFEG QLQHKDSLGS DQLVGPGDVS WMTAGRAVAH VERTPPEQLG QNKRAHGLQV
WLALPETEEQ CDPAYSYHPA ASLPRSDAMG VQITLIAGSG FCLESPVPVR SPTLYAELRL
SAGASLLIPV EHSERALYLI DGEAELDGET LPRHTMAVIP AGETPLLSAC GECHLALIGG
EPIGPRRMNW NFVASTPELI DQARQRWAAG DWPQVPGETT RIELPR
|
|---|
| |