| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2345 |
|---|
| Symbol | |
|---|
| ID | 5108580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2589592 |
|---|
| End bp | 2591796 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640503587 |
|---|
| Product | xanthine dehydrogenase, molybdenum binding subunit apoprotein |
|---|
| Protein accession | YP_001187835 |
|---|
| Protein GI | 146307370 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.986557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0105793 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCGT CCAGCATCGG CCAGCCGCTC GACCGCGTCG ACGGCGTGGC CAAAGTCACC
GGCCAGGCGC GCTATGCAGC CGAGTATCCC GCCGACGGCC TGCTGCACGG CAGCCTGGTG
TGCAGCGCGA TTGCCCGTGG CCGCGTTCGT GCGATCGACG CTTCGGCGGC TCTGGCGCTG
CCGGGCGTGG TCTGGGTGCT GACCCACGAG AACCGCCCGG CCATGGCCGG CGACGACGAG
AGCTACGAGG ATGAGGACGC GGCGGACGGT TCGCCGTTTC GCCCGCTGTT CGATGCGCGG
GTGCGCTACA GCGGCCAGCC GCTGGCCCTG GTGCTGGCCG ACAGCCTGGA ACTGGCGCGC
CACGCCGCCT CGCTGGTGCG CGTGGACTAT CAGCCCGACG AGCACGAAAC CGATTTGCGC
GCGGCGCTGC CGCGCGCCCA TGACGCCCCG GCCGAACTGC CTGAACCGCG TGGCGACGCA
GACGCAGCCA TCGCCGGCGC CGAGGTGCAA CTGGCGCTGG AATACGAGCT GGCCAACGAA
TACCACAACC CCATGGAGCC GCACGCCTCG ACGGTGATCT ACCAGCCAGG CGGCGACCTG
CTGGTGCATG ACAAGACCCA GGGCCCGCAG AACAGTCAGC AGTACCTGTG CAACGTCCTC
AACCTCGAGC CTTCGCGCGT GCGGGTTCTC TCGGCCTTCG TCGGCGGCGC CTTCGGCTCC
GGTCTGCGCC CGCAGTATCA GTTGCCGCTG GCGGCCATGG CGGCGCTGGC GCTGCGCCGT
TCGGTACGGG TGGCGCTGAC CCGCCAGCAG ATGTTCACCT TCGGCTACCG GCCGCGCACG
GTGCAGCGTC TGCGCCTGGG GGCCTCCGCT GAGGGCAAGC TGCAGGGGCT GATCCATGAG
GCCATCGGGC AGACCTCGCG TTTCGAGGAC TTCACCGAAC AGGTGGTGCC CTGGTCCGGC
ATGCTCTACC ACTGCGACCA CCTGCGCCTG GACTACCGGC TGACGCCGCT GGACGTCTAT
ACGCCGCTGG ACATGCGCGC CCCTGGTGCC GCCACCGGTC TGTTCGCCCT GGAGTCGGCG
ATGGACGAGC TGGCCTGGGC CACCGGGACG GACCCGGTGC AGCTGCGCCT GCTCAATTAC
AGCGAGACCG ATCAGAACCA GGGCAAGCCT TACTCGAGCA AGGAACTGCG CGCCTGCTAC
CGGCAGGGCG CCGAAGCCTT CGGCTGGAGC CGGCGCAGCG CGCAGCCGCG CAGCATGCGC
GAGGGTGAGC AGTTGATCGG CTGGGGCATG GCGACGGGCG TCTGGGAGGC CATGCAGAAG
CCTGCCAGCG CGCGCGCGAG CCTCAGCGCC GACGGCCGTC TGATCGTCGC CAGCGCCACC
TGCGACATCG GCCCGGGCAC CGCCACCGCC ATGACCCAGA TCGCCGCGGA CACCCTCGGC
ATCGACCCGG CGCGGGTGCA CTTCAAACTC GGCGATTCCA CATTGCCGAC GGCGCCGTTG
CAGGGCGGCT CGTTCACCGT GTCGTCGGTC GGCAGCGCCG TGCGCGAGGC CTGTCTGGCC
CTGGCCGGGC GCCTGTGCGA AGCCGCCCGG CAACTGCCCG ATGCCCCCTT CAGCGATGCC
AGCCAGTTGC GCTGCATCGA CGGCCGGGTG CAGCAGGGTG ACGACAGCCA GCGCGCCATC
GATCTGCTGG AGCTGCTGGC GCGCCACGGC AGCCTGGAAG CCGAGGTGGA TGCCAAACCG
GGCAAGCAGC GCGAGCAGGT CGCCAGCGCC ACCCATTCGG CGGTGTTCGT CGAGGTACGG
GTGGACGAAG CGCTGGGCAC TGTCCGCGTC AGCCGGGTGG TCAGCGCCAT CGCCGCGGGG
CGGGTGGTCA ACCCGAAAAC CGCGCGCAGC CAGATACTCG GCGGCGTGGT CTGGGGCATC
GGCATGGCCC TGCAGGAAGA GGCGCTGATC GACCACCGCC TCGGTCGCTG CATGAACCAC
AACCTTGCGG ACTATCACCT GCCGGTGCAT GCCGATATCG GCGACATCGA GGTGATCTTC
GTCGAGGAGG AAGACGCGCT GGTCAACGCC CTGGGCTCCA AGGGCGTCGG CGAAATCGGC
ATCGTCGGTG TTGCCGCTGC GGTGGCCAAT GCTGTGTATC ACGCCACCGG CAAGCGCATC
CGGCAGTTGC CGATCACCCT CGACCGGCTG CTGCAGGGCG AGTAG
|
|---|
| Protein sequence | MNSSSIGQPL DRVDGVAKVT GQARYAAEYP ADGLLHGSLV CSAIARGRVR AIDASAALAL
PGVVWVLTHE NRPAMAGDDE SYEDEDAADG SPFRPLFDAR VRYSGQPLAL VLADSLELAR
HAASLVRVDY QPDEHETDLR AALPRAHDAP AELPEPRGDA DAAIAGAEVQ LALEYELANE
YHNPMEPHAS TVIYQPGGDL LVHDKTQGPQ NSQQYLCNVL NLEPSRVRVL SAFVGGAFGS
GLRPQYQLPL AAMAALALRR SVRVALTRQQ MFTFGYRPRT VQRLRLGASA EGKLQGLIHE
AIGQTSRFED FTEQVVPWSG MLYHCDHLRL DYRLTPLDVY TPLDMRAPGA ATGLFALESA
MDELAWATGT DPVQLRLLNY SETDQNQGKP YSSKELRACY RQGAEAFGWS RRSAQPRSMR
EGEQLIGWGM ATGVWEAMQK PASARASLSA DGRLIVASAT CDIGPGTATA MTQIAADTLG
IDPARVHFKL GDSTLPTAPL QGGSFTVSSV GSAVREACLA LAGRLCEAAR QLPDAPFSDA
SQLRCIDGRV QQGDDSQRAI DLLELLARHG SLEAEVDAKP GKQREQVASA THSAVFVEVR
VDEALGTVRV SRVVSAIAAG RVVNPKTARS QILGGVVWGI GMALQEEALI DHRLGRCMNH
NLADYHLPVH ADIGDIEVIF VEEEDALVNA LGSKGVGEIG IVGVAAAVAN AVYHATGKRI
RQLPITLDRL LQGE
|
|---|
| |