| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1972 |
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| Symbol | |
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| ID | 5109863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2170393 |
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| End bp | 2172117 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503206 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001187465 |
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| Protein GI | 146307000 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0539187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGGC GCTCTGACGA AGCGCTGGCC GGGCTGCTGG GGCTCAGCAG CCAGTCGGCG
CGCAAGAGCC ATTACCCCGA GCTGCTGGCC CGCCTGGAAG AGCTGGAAAC CGAGCGCAAT
CGCTACAAAT GGCTGTTCGA GCACGCCGTG CACGGCATCA TCCAGGCCAG CCTGCAGGAT
GGCGTGCTGG CAGCCAACCC GGCGATGGCG CGCATGCTCG GCTACGACGA TCCGCAGCAG
GTGTTGTGGT CGCTGGGCGA CCTGGCGCGG CACCTGTTCG TCGGTGGTTT CGACGAGCTG
GAAGTGATTC GCCAGCGCCT GAGTCAGGGC CAGGCCCTGC TCGGCTACGA AACGCGCCTG
CGCCGGCGCG ATGGCAGCAC CATCGACGTG CTGATGAACC TGCTGCTCAA GCCTGAAGGC
GAGGGCGTCT TCGAAGGCTT CGTCGCCGAT ATCACCGAGC GCAAGCAGGC GCAGCAGCGC
CTGCAGCAGC TCAATGACGA ACTGGAGCGC CGCGTCGCCG CACGCACCTT CGAGCTGCTC
GAGTCCAACC GCAACCTGCA GCGGCAGATC GAGGAGCGCG AGCGCATCGA GCTGGCCCTG
CGCGAGGCGC GCGACGCCGC CGAGGCAGCC AACCGCAGCA AGGACAAGTA CCTGGCGGCG
GCCAGCCACG ACCTGCTGCA ACCGCTGAAT GCCGCGCGGC TGCTGATTTC CACCCTGCGC
GAACGGCAGT TGCCAAGTGC CGAGCACAAT CTGGTCGAGC GCAGCCACCT GGCGCTGGAG
GGCGCCGAGG ATCTGCTCGC CGACCTGCTG GACATTTCCA AGCTGGACCA GGCCGCGATC
AAACCGGATG TCGATGTCTA TCGTCTGCAG GAGCTGCTGG CACCCTTGGC CTCCGAGTTC
GAGGGCGTCG CCGCGGCCGC TGGCCTGCGT CTGCGCGTGC GCATTGCCGA CTGCGCCGTG
CACACCGACT TTCGCCTGCT CACGCGCATC CTGCGCAATT TTCTCAGCAA CGCCTGCCGT
TACACCGAAA GCGGGGGCGT GCTGCTCGGC GCGCGGCCGC GTGGCGCCTT CGTCGAACTG
CAGGTGTGGG ACAGCGGTCG CGGCATAGCG GCCGATCAGC TGGACAAGAT CTTCCTCGAG
TTCAACCAGC TCGATGTCGG CCGCGCCACC GAACGCAAGG GCGTCGGCCT GGGCCTGGCC
ATCGTCGAGC GCATCGCGCG CATGCTCGGC TACCCGGTGC AGGTGCGCTC CGAGCCCGGG
CGTGGCTCGG TGTTCAGCAT TCGCGTGCCC CGTGCCGAGG CGCGTCCCCA GCGCCAGCCG
CAGCCCGTAT TGCAGCCGGT ATTGGGAGAT CCTTTGCCGG GGCGGCGTCT GCTGGTGATC
GACAACGAGG CGGAGATTCT CCACAGCATG GCCGCGTTGC TCGGGCAGTG GGGCTGCGAG
GTGGTCATCG CGCTGGATTT GCCCGAGGCC CTGCAGCGTT TGCAGGGCAG GGCGCCGGAC
CTGATCCTGG CCGACTTCCA CCTGGATCAC GGCGTGCTCG GCTGTCAGGT GATCCAGCGG
TTGCGCGACG CGTTTGCCAG CGCGATCCCT GCCCTGATCA TCAGCGCCGA CCGCAGCGAT
GCCTGTCGCC GCGACCTTCA GGCATTGGGG GTTCCGCTGC TGAACAAGCC GGTCAAACCG
GGCAAGTTGC GTGCGGTGCT CAGCCAGCTT CTGCAGGAAA CGTGA
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| Protein sequence | MARRSDEALA GLLGLSSQSA RKSHYPELLA RLEELETERN RYKWLFEHAV HGIIQASLQD
GVLAANPAMA RMLGYDDPQQ VLWSLGDLAR HLFVGGFDEL EVIRQRLSQG QALLGYETRL
RRRDGSTIDV LMNLLLKPEG EGVFEGFVAD ITERKQAQQR LQQLNDELER RVAARTFELL
ESNRNLQRQI EERERIELAL REARDAAEAA NRSKDKYLAA ASHDLLQPLN AARLLISTLR
ERQLPSAEHN LVERSHLALE GAEDLLADLL DISKLDQAAI KPDVDVYRLQ ELLAPLASEF
EGVAAAAGLR LRVRIADCAV HTDFRLLTRI LRNFLSNACR YTESGGVLLG ARPRGAFVEL
QVWDSGRGIA ADQLDKIFLE FNQLDVGRAT ERKGVGLGLA IVERIARMLG YPVQVRSEPG
RGSVFSIRVP RAEARPQRQP QPVLQPVLGD PLPGRRLLVI DNEAEILHSM AALLGQWGCE
VVIALDLPEA LQRLQGRAPD LILADFHLDH GVLGCQVIQR LRDAFASAIP ALIISADRSD
ACRRDLQALG VPLLNKPVKP GKLRAVLSQL LQET
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