| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1933 |
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| Symbol | |
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| ID | 5110061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2124708 |
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| End bp | 2125703 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503168 |
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| Product | tRNA-dihydrouridine synthase A |
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| Protein accession | YP_001187427 |
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| Protein GI | 146306962 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.138188 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCAG AGAACACCAC CCGCCCCGCC CCGTCCCGCC GCTTTTCCGT GGCCCCGATG
ATGGATTGGA CCGATCGCCA CTGCCGCTTC TTCCTGCGTC AGCTGTCGCG TCACGCCCTG
CTCTATACCG AAATGGTCAC CACTGGCGCG CTGATCCATG GCGACCGCGA ACGTTTTCTG
CGTTACAGCG AATGCGAGCA TCCCATCGCC CTGCAGTTGG GCGGTAGCAA CCCGCAGGAT
CTGGCCGCCT GCGCGAAGAT GGCCGAGCAG CATGGCTACG ACGAGGTAAA CCTGAACGTC
GGCTGCCCCA GTGATCGAGT ACAGAACAAC ATGATCGGCG CCTGCCTGAT GGGGCATCCG
GCGCTAGTGG CCGACTGCGT GAAAGCCATG CGGGACGCGG TGAGCATTCC GGTAACGGTC
AAGCACCGCA TCGGCATCAA TGGCCGCGAC AGCTATTCCG AGCTATGCGA TTTCGTCGGC
CAGGTGCGGG ACGCCGGCTG CCGCAGCTTC ACCGTGCATG CCCGTATCGC CATCCTCGAG
GGGCTGTCGC CGAAGGAAAA TCGCGAGATT CCGCCGCTGC GCTACGATGT GGCCGCCCAG
CTCAAGCGTG ACTTCCCGGA TCTGGAAATC ATCCTCAACG GCGGCATCAA GACGCTGGAA
GAATGCGAGC AGCATCTACA GACCTTCGAT GGTGTGATGC TCGGCCGCGA GGCCTACCAC
AACCCTTATC TGCTGGCGCA AGTGGACAAC CGCCTGTTCG GCGCGGCGGC ACCCAGCATC
AGTCGCATGG ACGCCCTGCT CGCACTCAAG CCCTACGTCG AGCAGCACCT ACGCGAAGGC
GGCACCCTGC ATCACGTCAG CCGCCATGTG CTCGGCCTGG CTCAGGGCTT TCCCGGCGCC
CGGCGCTTTC GTCAGCTGCT GTCGGTAGAC ATCCACAAGG TACAGGATCC GCTGGGGCTG
CTGGATCAGG CCGCCGAATT GCTCCGCGGG CACTGA
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| Protein sequence | MQPENTTRPA PSRRFSVAPM MDWTDRHCRF FLRQLSRHAL LYTEMVTTGA LIHGDRERFL
RYSECEHPIA LQLGGSNPQD LAACAKMAEQ HGYDEVNLNV GCPSDRVQNN MIGACLMGHP
ALVADCVKAM RDAVSIPVTV KHRIGINGRD SYSELCDFVG QVRDAGCRSF TVHARIAILE
GLSPKENREI PPLRYDVAAQ LKRDFPDLEI ILNGGIKTLE ECEQHLQTFD GVMLGREAYH
NPYLLAQVDN RLFGAAAPSI SRMDALLALK PYVEQHLREG GTLHHVSRHV LGLAQGFPGA
RRFRQLLSVD IHKVQDPLGL LDQAAELLRG H
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