| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1680 |
|---|
| Symbol | |
|---|
| ID | 5109654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1848784 |
|---|
| End bp | 1849866 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640502909 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001187176 |
|---|
| Protein GI | 146306711 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.560813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCGC AACTCAGCAA ACGTCCCTGG ATCATCGCCA TCGTCATCGT GGTCGCGCTG
CTGGCCTGGC TGCTCAGCGG TAATCGCTTC GCCGCTCGCG ACGCGGTCGA ACCGGACCAA
CCCGCTGCGG CCGCCGATCT GGCGCGCGTC GAGGTGCAAT GGCTGCAGGC CGAGCCGATG
CAGCGCCAAC ATGTGGTGCA GGGCCAGATC GAGGCCTGGC GCCGGGTCGA GCTGCGCGCC
CAGGTCAGCG GCAGCGTGCA GAGCCTGGAT CAGGACAAGG GCAACCGCGT CGCCGCCGAG
CAACTGCTGT TGAGCCTGTC CCCGGATGAT CGCCCGGCCC AGGTCGCGCG CAGCGAGGCC
GATGTGCGCC AGCGCGAAAG CGATGTGACC GCCGCCAAAC GCCTGCGCGA GCGCAACCTG
ATTTCCGCCA ACGAGCTGAT GCGTCTGGAA AGCGAGCTGG CCAAGGCCCG CGCCGAACTG
GACAGCGCTC GCCTGCAACT GCGCAATACC AAGATCAGGG CGCCGTTCGC CGGCATCTAC
GATCAGCGCA CGGTCGAGCT GGGCGACTTC GTCCAGCCGG GGCAGAGCCT GCTGACCCTG
GTGGACATCG ACCGCCTCAA GGTCAGCGCG CAGATCGCCC AGCAACAGGT GACCCAGCTG
GAACTGGGCC AGCCGGTCAA GGTCGAGCTG CTCGACGGCC GCACCCTAGA AGGCGAGCTG
CACTTTATCG CCGCCGCGGC CGACCCCGGC TCGCGCAGCT TCCGCATCGA GGTCAAGGTG
GACAACCCGG GCGGCCTGCG TCTGGCCGGG GCCAGCGCCA CCCTGCACAT CCAGACCGGC
GAGGCCATGG CCCACCGCCT GTCCCCTGCC CTGCTCAGCC TGGATGAAAG CGGCCGCCAC
GGGGTCAAAT GGGTCAACGA GGCGCAACGC GTGGAGTTCA CCCCGGTGCA ACTGATCAGC
GTCGACAACC AGGGCGCCTG GGTCAGCGGC CTGCCGCCGA AGGTGGCGCT GATCACCCTC
GGCCAGGGCT TCGTCCAGCC CGGCCAGCAG GTGCGCACGC AACTTGCCGC CGAGGGCAGC
TGA
|
|---|
| Protein sequence | MFAQLSKRPW IIAIVIVVAL LAWLLSGNRF AARDAVEPDQ PAAAADLARV EVQWLQAEPM
QRQHVVQGQI EAWRRVELRA QVSGSVQSLD QDKGNRVAAE QLLLSLSPDD RPAQVARSEA
DVRQRESDVT AAKRLRERNL ISANELMRLE SELAKARAEL DSARLQLRNT KIRAPFAGIY
DQRTVELGDF VQPGQSLLTL VDIDRLKVSA QIAQQQVTQL ELGQPVKVEL LDGRTLEGEL
HFIAAAADPG SRSFRIEVKV DNPGGLRLAG ASATLHIQTG EAMAHRLSPA LLSLDESGRH
GVKWVNEAQR VEFTPVQLIS VDNQGAWVSG LPPKVALITL GQGFVQPGQQ VRTQLAAEGS
|
|---|
| |