Gene Pmen_1652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1652 
Symbol 
ID5109626 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1814226 
End bp1815497 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content61% 
IMG OID640502880 
Producthypothetical protein 
Protein accessionYP_001187148 
Protein GI146306683 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0487552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTCAC TTCGTAATTC CCGTGTTTTC CTTTGCTCCT TGACGCTCAT CCTGGCCTCG 
CTCTGGCTGT TGGCGATGCG GGCCGGCGCC GCACAAGAGC CTGACGGCGC CGTGGAGTTT
CCCGTCTGGA GTCATTCCTT TGTTGGCACG CTGGGCAGTA AGCATGTCGA GGTCTCGCTG
AGCCGTATTG CCGATGACCT TTCAGGCACC TACTGCTATC AGCCCTGCAG CAACCAGACG
CCCAATCAGC TTGTGCTGCG GGGACGGGTG CGGGGGGATA GGGCGGAGTT GATCGAGCAT
GATCTTGGGC ATAGGGCGAT CACTACGGGC GTCTGGATGA TCGAGTCACT CGATGGCGGT
GTCACTGGCA TCTGGGGTTC GCCCGACGGC AAGCGCAGGT TGCCACTGGC CTTGCGCAAG
GCCGAGTCTG CGGACGCGCT GCAAGCTCGC TTTCCCTACG ATGTACGTCT GCTCGCCGAC
GCGCTGCCTG AGCTTCAGGG CGACGGTTGC CCGACGCCGC CACTCGTTTC GGCCATCCGT
CTGTACAAGG ACGGCGTGTT GTTCCAGACC CTGGAAACCG AGTCCCAGGG GACCTGCAGC
ATTTTCACGC CCGAGCTGTT AGATGCGAAC TTCGATGGTT GGCCGGATCT GAGCATTGCC
CAGTTTCTCC CTGCTGGCCC CAACATTTCG CATCAGACCT GGCTCTATGA GCCTGCCTCG
GCGCGTTTCG TCGATGCGCC AGCCACGCTG CAGGGTGTTA CCTCTCCTGA TTTCGACCCA
GAGCATCAGG TCGTCTATTC CTTCTGGCGG GCAAGCTGCT GTGAGCATGG CGTATCGATA
TACCGCTGGA AGGGCGGTGA CCTGGAGGAG GTCGATACCA AGAGCAGTTA CTTCCTGCCG
GTGATGGATG GCGGCGTACG GCGCATTTGT TATATCGCGC CCGGTTACAA TGAGGGCTCC
ATCGAGTATC CGGGGCGGGT TGAACAGACC GCCGATGGAC GCCTGAGGCT GCATCAGATC
GACCTGAAAA CCTGTGAGGT CGACGACTGG ACGTTTCTGC AGCGAACCTA CATCGATATC
TGGGAGCCCG CCCTGCCTGG GGAGAAACCG GTCCTGCTGC GCTCCGAAGG TGTCACCTGG
ATCGCCACCG ATACAACCGC CGGCCAGCGC TATTGCCCCG AGGTGCCGTA CTTCGACAGC
GGTCACATAC GGCGTGTGGT ACTCAGGGAT GATCCCGACT GGTGCACAAA AGAGCGTCCG
TCACAGGAGT AG
 
Protein sequence
MRSLRNSRVF LCSLTLILAS LWLLAMRAGA AQEPDGAVEF PVWSHSFVGT LGSKHVEVSL 
SRIADDLSGT YCYQPCSNQT PNQLVLRGRV RGDRAELIEH DLGHRAITTG VWMIESLDGG
VTGIWGSPDG KRRLPLALRK AESADALQAR FPYDVRLLAD ALPELQGDGC PTPPLVSAIR
LYKDGVLFQT LETESQGTCS IFTPELLDAN FDGWPDLSIA QFLPAGPNIS HQTWLYEPAS
ARFVDAPATL QGVTSPDFDP EHQVVYSFWR ASCCEHGVSI YRWKGGDLEE VDTKSSYFLP
VMDGGVRRIC YIAPGYNEGS IEYPGRVEQT ADGRLRLHQI DLKTCEVDDW TFLQRTYIDI
WEPALPGEKP VLLRSEGVTW IATDTTAGQR YCPEVPYFDS GHIRRVVLRD DPDWCTKERP
SQE