| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1647 |
|---|
| Symbol | |
|---|
| ID | 5109621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1809749 |
|---|
| End bp | 1810309 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640502875 |
|---|
| Product | PfpI family intracellular peptidase |
|---|
| Protein accession | YP_001187143 |
|---|
| Protein GI | 146306678 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase |
|---|
| TIGRFAM ID | [TIGR01382] intracellular protease, PfpI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.920714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCGA ATCTGCAAGG CAAGAAGGTG CTGTTCATCA CTGCCAACAG CGGCATCGAG
CGCGACGAGT TGCTCAAGCC GATGCAGGCA TTGAAGGATC AGGGCGCAAG CGTCACCCAT
GCCAGCGTCA AGGGTGGCGA GGCCGAGACC TGGCTGAAGG ACAGCGAGAA GGACGTTACC
GTGCAGTCCG ACACCCAGCT CAAGGGCCTG AGCGCGGCGG ACTACGACCT GCTGGTGATC
CCCGGCGGTA CGGTGAATGC CGACACCCTG CGTCAGGACA GCGATGCCCA GCGCCTGGTG
CAGGAGTTTC GCCAAGCGAG CAAGACGGTC GCCGCGATCT GCCATGGCCC CTGGCTGCTG
ATCGATGCCG GAGTGGTGTC CGGCAAGGCG CTGACCTCCT ACTCCAGCGT GCGCACCGAC
CTGGTGAACG CCGGCGCCGA TTGGGTGGAT GCCCAGGTCA AGGTTTGCCC AGGGCAGAAC
TGGAAGCTGA TCACCTCGCG CACCCCGGAC GATCTGCCAG CCTTCAACGA AGCGCTGAGC
CAGGCATTGC AGGCAGCGTA A
|
|---|
| Protein sequence | MSSNLQGKKV LFITANSGIE RDELLKPMQA LKDQGASVTH ASVKGGEAET WLKDSEKDVT
VQSDTQLKGL SAADYDLLVI PGGTVNADTL RQDSDAQRLV QEFRQASKTV AAICHGPWLL
IDAGVVSGKA LTSYSSVRTD LVNAGADWVD AQVKVCPGQN WKLITSRTPD DLPAFNEALS
QALQAA
|
|---|
| |