| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1540 |
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| Symbol | |
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| ID | 5108490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1700308 |
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| End bp | 1701060 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502768 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001187036 |
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| Protein GI | 146306571 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4700] Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.913508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTGC TCGCCCTGCT GGTCATCGCC TGCCAAGTCA CCTGTGGCCT CCACGTGGTG
CGCAGTGGTC AGGAACGCTA CTGGCTGTAC CTGATCATCG CCCTGCCTGG TCTCGGTTGC
CTAATCTACT TCCTCGGCAT CATGCTGCCC GACCTGCTTG GCAGCCGGCG CGGCCGAAAG
GCATTGAACC GACTGCACGA CAGCATCGAC CCCGAGCGTC ATCTGCGCGC CCTGCGCGAC
GAACTGGAAA TCCGCGACAC ACGCGATACT CGCGTCAACC TGGCCGATGA GCTGCTGCGC
ATGGGCCAGG CCGAAGAGGC CGCCAAGCAC TATCAAATCG CCCTGCGCGG CATTCACAGC
GACGCACCCG ACATCCTCCT CGGCCTGGCC CGCGCACGCT TCGCCCTGGG CGATTTTGCC
GGCTGTCAGG CGAGCCTCGA TCAACTGATC GCCCACAACC CCGACTTCCG CTCCAGCGAC
GGCCACCTGC TGTATGCCCG CGCGCTGGAA GGCCAGGGCA ACGACCTCAA GGCCGAAGAG
GAATACCGCG CCCTCGGTAG CTACTGCGCC AGCCCCGAGG CCAATTACCG CTATGCCCTG
CTGCTGCGCC GGATGGGACG CCAGCGCGAG GCCGTGGATC TGCTGCAGCA GATCCACACC
CACGCCCGCC GCTCCGCCCG GCACTATCGA GTTCTACACA AGGAGTGGCT GGACCTCAGC
CAGAAAGCGC TGCTCGAGCT GCAGCGCGGC TGA
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| Protein sequence | MPLLALLVIA CQVTCGLHVV RSGQERYWLY LIIALPGLGC LIYFLGIMLP DLLGSRRGRK
ALNRLHDSID PERHLRALRD ELEIRDTRDT RVNLADELLR MGQAEEAAKH YQIALRGIHS
DAPDILLGLA RARFALGDFA GCQASLDQLI AHNPDFRSSD GHLLYARALE GQGNDLKAEE
EYRALGSYCA SPEANYRYAL LLRRMGRQRE AVDLLQQIHT HARRSARHYR VLHKEWLDLS
QKALLELQRG
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