| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1484 |
|---|
| Symbol | |
|---|
| ID | 5108435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1643334 |
|---|
| End bp | 1644569 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502713 |
|---|
| Product | RNA polymerase ECF-subfamily sigma factor |
|---|
| Protein accession | YP_001186981 |
|---|
| Protein GI | 146306516 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.159854 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATAT CGCCACCTGT CACCGAACTG ATCGAGCGCC TTTACCGCGA GGAGTCGCGC
CGCGTGCTCG CTACCCTGAT CCGTCTGCTG GGCGATTTCG ACCTGGCCGA GGAGGCGCTG
CACGAGGCAT TTCGCAGTGC GGTCGAGCAA TGGCCGCAGA GCGGTGTGCC GGACAACCCG
CGTGCCTGGC TGGTCTCTGC CGGGCGCTTC AAGGCCATCG ACAACCTGCG TCGGCAACGT
CGCTTCCAGC CGCTGGATGA ACAGGCCGAG TTGCCCGACG AGAGTGACGT CGAGGGAGGC
GAACTGCTCG AAGACGACCG CCTGCGCCTG ATCTTCACCT GCTGTCACCC GGCGCTGGCC
AGTGATGCCC AGGTGGCACT GACCCTGCGC GAGGTGTGCG ACCTGACCAC CGAGGAGATC
GCCCGCGCTT TCCTCTCCAG CCCTGCGACC CTGGCCCAGC GCATCGTGCG GGCCAAGGCG
AAGATTCGCG ATGCGCGCAT TCCCTACGAA GTGCCGGGGC GCAGCGAGCT GCCCGAGCGG
TTGGAGGCGG TGTTGCGCGT GGTTTACCTG GTGTTCAACG AAGGCTACTT CGCCAGCTCC
GGCGATTCGC TGACCCGCAG CCAGCTGTCC GACGAGGCGA TTCGGCTGGG CCGCCTGCTG
CTGGAGTTGC TGCCCGAGCC GGAAGTGCAG GGGCTGCTGG CGTTGATGCT GCTGCACGAA
TCGCGACGCG CTGCGCGCAG CGGCGTCGAT GGCGAGGTGA TTTTGCTGGA GGCCCAGGAT
CGCAGCCTGT GGAATCGCGA GCTGATCGCT GAAGGCGAGG CGCTGGTGCT GCAGGCGCTG
CACTCGCGGC GTTTCGGCGC CTACAGCCTG CAGGCGGCGA TTGCCGCGGT GCATGCCGAG
GCGGCCAGTC TGGAAGAAAC CGATTGGGCG CAGATCGTCG GGCTGTATGA CGAGTTGCTG
CGCCTGAACC CGTCGCCGGT GATCGAGCTC AACCGCGCCG TGGCACTGGC CATGCGCGAT
GGCGAGCAGG CGGGGCTGGT GGAAGTCGAC CGACTGCTGG CTGCGGGCGA ACTGCAGGGT
TACCACCTGG CCCATGCGGC GCGGGCCGAT CTGTTGCGCC GGTTGGGCCG CCGCGAGCAG
GCGATCGCTG CCTACCGCCA GGCCCTGGCG CTGGCGCAAC AGGGCCCGGA TCGGCAGTTT
CTGCAGAGCA GACTGGAGGA GTTAGGTGAC CCGTAG
|
|---|
| Protein sequence | MSISPPVTEL IERLYREESR RVLATLIRLL GDFDLAEEAL HEAFRSAVEQ WPQSGVPDNP
RAWLVSAGRF KAIDNLRRQR RFQPLDEQAE LPDESDVEGG ELLEDDRLRL IFTCCHPALA
SDAQVALTLR EVCDLTTEEI ARAFLSSPAT LAQRIVRAKA KIRDARIPYE VPGRSELPER
LEAVLRVVYL VFNEGYFASS GDSLTRSQLS DEAIRLGRLL LELLPEPEVQ GLLALMLLHE
SRRAARSGVD GEVILLEAQD RSLWNRELIA EGEALVLQAL HSRRFGAYSL QAAIAAVHAE
AASLEETDWA QIVGLYDELL RLNPSPVIEL NRAVALAMRD GEQAGLVEVD RLLAAGELQG
YHLAHAARAD LLRRLGRREQ AIAAYRQALA LAQQGPDRQF LQSRLEELGD P
|
|---|
| |