Gene Pmen_1373 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1373 
Symbol 
ID5109426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1538114 
End bp1539217 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content69% 
IMG OID640502602 
Productenoyl-CoA hydratase/isomerase 
Protein accessionYP_001186870 
Protein GI146306405 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.502408 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.0715263 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGC AATTCGAAGA ACGCCCCAGC CTGCATGGCT ACCGCATCGG CATCGCCAGC 
CTGGACGCCG AGAAGAGCCT CAACGCTCTC ACCCTGCCGA TGATCCAGGC GCTCGATGCG
CGCCTGCAAG CCTGGGCCGA AGACCCGACC ATCGCCTGCG TGATGCTGCG CGGCAACGGC
CCGAAAGCCT TCTGCGCCGG CGGCGACGTG GTGCAGCTGG TGCAGCAGTG CCGCGAACAC
CCCGGTGAGG TGCCGCCGCT GGCGCGGCGC TTCTTCGCCG ACGAATACCG CCTCGACCAC
CGCATCCACA GCTACCCCAA ACCCTTCATC TGCTGGGCCC ACGGCCACGT GCTGGGCGGC
GGCATGGGCC TGATGCAGGG CGCCGGCGTC CGCATCGTCA CGCCGAGCAG CCGACTGGGC
ATGCCGGAAA TCAATATCGG CCTGTATCCG GATGTCGGCG GCAGCTGGTT CCTTGCCCGC
CTGCCGGGGC GTCTGGGCCT GTTTCTCGGC CTCACCGCCG CCAGCATCAA CGCCCGCGAT
GCGCTGGACC TGAACCTGGC CGACCGCTTT CTGCGTGACG ACCAGCAGGA CGCCCTGCTC
GAAGGCCTGG TGCAGCTGAA CTGGCGCGAG CAGCCGGCCG CGCAACTGCA CAGCCTGCTG
CGCGCACTGG AGAACGAGGC GCGCGGCGAA CTGCCGGCGG CCCAGTGGCT GCCGCGCCGC
GAGCGTATCG ACGAGCTGCT CGATGTCGCC GACCTGCCGG CGGCGGTTCA GGCCATCAGC
GCCCTGCAGC AGGATGACGA CGCCCTGCTC GCCCGCGCCG CCAAGACCCT GGCCCACGGC
TGCCCGCTGA CCGCGCACCT GGTGTGGCAG CAGATCCGCC GCGCGCGGCA CCTGTCGCTG
GCCGAGGTGT TCCGCATGGA ATACGCCATG AGCCTGAATT GCTGCCGCCA CCCGGACTTC
CCCGAAGGCG TGCGCGCTCG CCTGATCGAC AAGGACCAGA CGCCGCACTG GCATTGGCCG
GACGTAGCCG CGATTCCCGA GGCGGTGATC GAAGCGCATT TCGCCCCGGC CTGGGAGGGT
GAACATCCGT TGGCGGATCT GTAG
 
Protein sequence
MNLQFEERPS LHGYRIGIAS LDAEKSLNAL TLPMIQALDA RLQAWAEDPT IACVMLRGNG 
PKAFCAGGDV VQLVQQCREH PGEVPPLARR FFADEYRLDH RIHSYPKPFI CWAHGHVLGG
GMGLMQGAGV RIVTPSSRLG MPEINIGLYP DVGGSWFLAR LPGRLGLFLG LTAASINARD
ALDLNLADRF LRDDQQDALL EGLVQLNWRE QPAAQLHSLL RALENEARGE LPAAQWLPRR
ERIDELLDVA DLPAAVQAIS ALQQDDDALL ARAAKTLAHG CPLTAHLVWQ QIRRARHLSL
AEVFRMEYAM SLNCCRHPDF PEGVRARLID KDQTPHWHWP DVAAIPEAVI EAHFAPAWEG
EHPLADL