| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1258 |
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| Symbol | |
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| ID | 5109074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1419327 |
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| End bp | 1421042 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502483 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_001186755 |
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| Protein GI | 146306290 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0547668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTACCA GTCAGTTCCT GCTCTCGACC CTGAAAGAAA CCCCTTCCGA TGCCGTGGTG
ATCAGCCACC AGCTGATGCT GCGTGCCGGC ATGATCCGCA AGCTGGCCTC CGGCCTGTAC
ACCTGGCTGC CGATGGGCCT GCGCGTGCTG CGCAAGGTCG AGAACGTGGT GCGCGAGGAA
ATGAATGCCG CCGGTGCGCT GGAAGTGCTG ATGCCGGCCA TTCAGCCTGC CGAGCTGTGG
CAGGAATCCG GTCGCTGGGT GCAGTACGGC CCCGAGCTGC TGCGGGTCAA GGATCGTCAC
GAGCGCGAAT TCTGCGTCGG CCCGACCCAT GAAGAGGTCA TCACCGACCT GGCCCGCAAC
GAGCTGAACA GCTACAAGCA GCTGCCGATC AACATGTACC AGATCCAGAC CAAGTTCCGT
GACGAGATCC GTCCGCGCTT CGGCCTGATG CGTGGTCGCG AGTTCATCAT GAAGGACGCC
TACTCCTTCC ATGCCGACCA GGCGTCCCTG CAGGAAACCT ATGACCGCAT GCATCAGGCC
TACTGCAACG TGTTCAGCCG CCTGGGCCTG AACTTCCGCC CCGTACAGGC CGATACCGGC
TCGATCGGCG GCACCGGCTC CCACGAGTTC CACGTGCTGG CCGAGTCCGG CGAAGACGAT
ATCGCCTTCA GCAACGTCTC CGACTACGCC GCCAATATCG AGAAGGCCGA AGCCGTGCCG
CGTGAGAAAG AGCGCGCTGC CGCGACCGAG GACATGCGCC TGGTCGACAC CCCCAACACC
AAGACCATCG ACGCCCTGGT GCAGGGCTTC GGCCTGGCGA TCGAGAAGAC CATCAAGACC
CTGGTGGTGC ATGCCGCCGA GGAGGGCAAG CTGATTGCCC TGATCGTGCG CGGCGACCAC
GAGCTGAACG AAATCAAGGC CGCCAATCTG GAGCAGGTGG CAAGCCCGCT GCAGATGGCC
AGCGAAGCGG AGATTCGCGC CGCCATCGGC GCCGGCCCCG GCTCCCTGGG GCCGGTCAAC
CTGCCGATCC CCTGCATCGT CGATCGCAGC GTGGCGCTGA TGAGCGATTT TGCCTCCGGT
GCCAACATCG AAGACAAGCA CTATTTCGGT GTGAACTGGG AGCGCGACCT GCCGCTGCCG
ACCGTTGCCG ACCTGCGCAA CGTGGTTGCG GGCGACCCCA GCCCGGACGG CCAGGGCACC
CTGGAAATCA AGCGCGGCAT CGAAGTCGGC CACATCTTCC AGCTCGGCAC CAAGTACAGC
GAGGCGATGA ACTGCCAGGT ACTGGGCGAG AACGGCAAGC CGGTCACCCT GACCATGGGC
TGCTACGGCA TCGGCGTATC GCGCGTGGTA GCCGCGGCCA TCGAGCAGAA CCACGACGAA
CGCGGCATTC TCTGGAACGA CGCCCTGGCG CCGTTCCACA TCGCGCTAGT ACCGCTGCGC
TACGAAACCG AACAGGTACG CGAGGCCACC GACAAGCTGT ATGCCGAACT CACCGCCGCA
GGCTATGAGG TGCTGCTGGA CGACCGCGAC AAGAAGACCA GCCCCGGCAT CAAGTTCGCC
GACATGGAGC TGATCGGCAT TCCGCACCGC GTGGTGGTCA GCGACCGCGG CCTGGCCGAG
GGCAATCTCG AGTACAAGAG CCGCGCCGAG ACCGAAGCCC AGGCCGTACC GCTGGCCGAG
ATCCTGCCTT TCCTGCAAGC CCGTATCAGC CGCTGA
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| Protein sequence | MRTSQFLLST LKETPSDAVV ISHQLMLRAG MIRKLASGLY TWLPMGLRVL RKVENVVREE
MNAAGALEVL MPAIQPAELW QESGRWVQYG PELLRVKDRH EREFCVGPTH EEVITDLARN
ELNSYKQLPI NMYQIQTKFR DEIRPRFGLM RGREFIMKDA YSFHADQASL QETYDRMHQA
YCNVFSRLGL NFRPVQADTG SIGGTGSHEF HVLAESGEDD IAFSNVSDYA ANIEKAEAVP
REKERAAATE DMRLVDTPNT KTIDALVQGF GLAIEKTIKT LVVHAAEEGK LIALIVRGDH
ELNEIKAANL EQVASPLQMA SEAEIRAAIG AGPGSLGPVN LPIPCIVDRS VALMSDFASG
ANIEDKHYFG VNWERDLPLP TVADLRNVVA GDPSPDGQGT LEIKRGIEVG HIFQLGTKYS
EAMNCQVLGE NGKPVTLTMG CYGIGVSRVV AAAIEQNHDE RGILWNDALA PFHIALVPLR
YETEQVREAT DKLYAELTAA GYEVLLDDRD KKTSPGIKFA DMELIGIPHR VVVSDRGLAE
GNLEYKSRAE TEAQAVPLAE ILPFLQARIS R
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