| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1208 |
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| Symbol | |
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| ID | 5108709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1362823 |
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| End bp | 1365876 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502433 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_001186705 |
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| Protein GI | 146306240 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.584016 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.669413 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTTA CCGATCCCTT CATCCGCCGC CCGGTGCTGG CCACCGTGGT CAGCCTGCTG
ATCGTCCTGC TCGGCTTTCA GGCCTTCAGC AAGCTGAGCA TCCGCCAGTA TCCGCAGATG
GAGAACGCCC TGATCACGGT GACCACCGCC TACCCCGGGG CCAATGCCGA GACCATCCAG
GGCTATATCA CCCAGCCGCT GCAGCAGAGC CTGGCCAGTG CCGAAGGCAT CGACTACATG
ACGTCGTCGA GCCAGCAGAA CCTGTCGACC ATTTCCATCT ACGCCCATAT CGGCGCCGAC
ACCGACCGCC TGTTCACCGA ACTGCTGGCC AAGGCCAACG AGGTGAAGAA CCAGCTGCCG
CAGGACGCCG AAGACCCGGT GCTGTCCAAG GAAGCGGCTG ACGCCTCGGC GCTGATGTAC
GTCAGTTTCT ACAGCGACGA GCTGTCCAAC CCGCAGATCA CCGACTACCT GTCGCGCGTG
ATCCAGCCCA AGCTGGCCAC CCTGCCCGGC ATGGCCGAGG CGCAGATCCT CGGCAACCAG
GTGTTCGCCA TGCGCCTGTG GCTGGACCCG GTGAAGATGG CCGCCTACGG CATCACCGCC
GGCGACCTCA ACAGCGCGGT GCGCAAGTAC AACTTCCTCT CCGCCGCCGG CGAGGTGAAG
GGCCAGTACG TGGTCACCAG CATCAACGCC AGCACCGACC TGAAGTCCGC CGAGGCCTTC
GGCGCCATTC CGGTGAAGAC GCTGGGTGAC ACCCGCGTGC TGGTGCGCGA CATCGCCCGG
GTGGAAATGG GCGCGGAGAA CTACGACTCG ATCAGCTCGT TCGACGGCAT TCCCTCGGTG
TACATCGCCA TCAAGGGCAC GCCGAGCGCC AACCCGCTGG ACGTGATCAA GGAAGTGCGC
GGCATCCTTC CCGAACTGGA GGCTCAGCTG CCGCCGAACC TCAAGGTGGC CATCGCCTAC
GACGCCACCC TGTTCATCCA GGCGTCCATC GACGAGGTGG TCAAGACCTT GGTCGAGGCG
GTGCTGATCG TCATCGTCGT GGTGTTCCTG TTCCTCGGCG CATTCCGCTC GGTACTGATC
CCGGTGATCA CCATCCCGCT GTCGATGATC GGCGTGCTGT TCTTTATGCA GCTGATGGGG
TACTCAATAA ATCTCCTTAC CCTCTTGGCC ATGGTGCTGG CCATCGGCCT GGTGGTGGAC
GATGCCATCG TCGTGGTGGA GAACATCCAC CGCCATATCG AGGAGGGCAA GACGCCATTC
GACGCGGCCA TCGAGGGCGC GCGCGAAATC GCCGTGCCGG TGGTGTCGAT GACCATCACC
CTGGCTGCGG TGTACGCGCC CATCGGCTTC CTCGAAGGCC TGACCGGCGC GCTGTTCAAG
GAGTTCGCCC TGACCCTGGC CGGCGCGGTG ATCATCTCCG GCATAGTCGC GTTGACCCTG
TCGCCGATGA TGTGCGCCAA GCTGCTGCGT CACGACGAGA ACCCCTCGGG GCTGGCCCAT
CGCCTGGACA TGATCTTCGA CCGGCTCAAG CAGCGTTACC AGAAGATGCT CCACGGTACC
CTCAACACCC GCCCGGTGGT GGTAGTGTTC GGCGTGATCG TCATGGCGCT GATCCCGGTG
CTGCTCAGCT TCACCGAAAG CGAACTGGCG CCCGAGGAAG ACCAGGGCGT GGTGTTCCTC
TTCGCCAACG CGCCGCAGCC GACCAACCTC GACTACGTCA ACGCCTACAC CGATCAGTTC
GTGGAGATTT TCAAGAGCTT CCCCGAGTAC TACTCTTCGT TCCAGATCAA CGGTTTCGAT
GGCGTGCAGT CGGGCATCGG CGGCTTTCTG CTGACGCCGT GGAACGACCG CGAACGCACG
CAGATGGAGA TCCTTCCGGA GGTGCAGGCG CGGCTCAACC ACATCCCCGG CCTGCAGATC
TTCGGCTTCA ACCTGCCGTC GCTGCCGGGC ACCGGCGAGG GCCTGCCGTT CCAGTTCGTG
GTCAACACGC CGAACGACTA CGAGTCGCTG CTGCAGGTGG CCGAACGGGT CAAGGCGCGC
GCGCTGGAGT CGGGCAAGTT CGCCTTCCTC AATATCGACC TGGCCTTCGA CAAGCCGGAA
ATCGTGGTCG ACATCGACCG CGCCAAGGCC GCGCAGATGG GCGTGTCCAT GGAAGACCTG
GGCGCCACCC TGGCCAGCCT GCTCGGTGAG GGCGAGATCA ACCGCTTCAC CATCGACGGG
CGCAGCTACA AGGTGATCGC CCAGGTCGAG CGCGCCTACC GCGACAATCC GGGCTGGCTG
GACAACTACC ACGTGCGCAG CGAGAGCGGC GCCATGGTGC CGCTGGGCAC CCTGATCAGC
CTCAGCGACC GTGCCCGACC GACCAAGCTC AAGCAGTTCC AGCAGCTCAA CTCGGCGATC
ATCGAAGGCG TGCCCATCGT CAGCCAGGGC GAGGCGATCG ACACCATCAC CGCCATCGCC
CGCGAGGAAG CGCCGCGCGG CTACAGCTTC GACTACGCCG GTGCCTCGCG GCAGTACATC
CAGGAAGGCA GCGCGCTGTT CGTCACCTTC GCCCTGGCCC TGGCGATCAT CTTCCTGGTG
CTGGCCGCGC AGTTCGAGAG CTTCCGCGAC CCGCTGGTGA TTCTGGTCAC CGTGCCGCTG
TCGATCTGCG GCGCGCTGGT GCCGATCTTC CTCGGTTTCT CCACCATGAA CATCTACACC
CAGGTGGGCC TGGTGACGCT GATCGGCCTG ATCAGCAAGC ACGGCATCCT CATCGTCGAA
TTCGCCAACC AGCTGCGGCA CGAGAAGGGC CTGCCGCTGC GCGAGGCCAT CGAGGAAGCG
GCCGCCATTC GCCTGCGCCC GGTGCTGATG ACCACCGCGG CGATGGTGTT CGGCATGGTG
CCGCTGATCC TCGCCAGCGG CGCCGGTGCG GTGAGCCGCT TCGACATCGG CCTGGTGATC
GCCACCGGCA TGAGCGTCGG CACGCTGTTC ACCCTGTTCG TCCTGCCCTG CGTCTACAGC
CTGCTGGCCA AGCCGGATGC CGAGCCGCAG GCGCAGGCCG TGCCCGTTCA CTGA
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| Protein sequence | MAFTDPFIRR PVLATVVSLL IVLLGFQAFS KLSIRQYPQM ENALITVTTA YPGANAETIQ
GYITQPLQQS LASAEGIDYM TSSSQQNLST ISIYAHIGAD TDRLFTELLA KANEVKNQLP
QDAEDPVLSK EAADASALMY VSFYSDELSN PQITDYLSRV IQPKLATLPG MAEAQILGNQ
VFAMRLWLDP VKMAAYGITA GDLNSAVRKY NFLSAAGEVK GQYVVTSINA STDLKSAEAF
GAIPVKTLGD TRVLVRDIAR VEMGAENYDS ISSFDGIPSV YIAIKGTPSA NPLDVIKEVR
GILPELEAQL PPNLKVAIAY DATLFIQASI DEVVKTLVEA VLIVIVVVFL FLGAFRSVLI
PVITIPLSMI GVLFFMQLMG YSINLLTLLA MVLAIGLVVD DAIVVVENIH RHIEEGKTPF
DAAIEGAREI AVPVVSMTIT LAAVYAPIGF LEGLTGALFK EFALTLAGAV IISGIVALTL
SPMMCAKLLR HDENPSGLAH RLDMIFDRLK QRYQKMLHGT LNTRPVVVVF GVIVMALIPV
LLSFTESELA PEEDQGVVFL FANAPQPTNL DYVNAYTDQF VEIFKSFPEY YSSFQINGFD
GVQSGIGGFL LTPWNDRERT QMEILPEVQA RLNHIPGLQI FGFNLPSLPG TGEGLPFQFV
VNTPNDYESL LQVAERVKAR ALESGKFAFL NIDLAFDKPE IVVDIDRAKA AQMGVSMEDL
GATLASLLGE GEINRFTIDG RSYKVIAQVE RAYRDNPGWL DNYHVRSESG AMVPLGTLIS
LSDRARPTKL KQFQQLNSAI IEGVPIVSQG EAIDTITAIA REEAPRGYSF DYAGASRQYI
QEGSALFVTF ALALAIIFLV LAAQFESFRD PLVILVTVPL SICGALVPIF LGFSTMNIYT
QVGLVTLIGL ISKHGILIVE FANQLRHEKG LPLREAIEEA AAIRLRPVLM TTAAMVFGMV
PLILASGAGA VSRFDIGLVI ATGMSVGTLF TLFVLPCVYS LLAKPDAEPQ AQAVPVH
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