Gene Pmen_1093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1093 
Symbol 
ID5108066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1228640 
End bp1229329 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content65% 
IMG OID640502317 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_001186592 
Protein GI146306127 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4215] ABC-type arginine transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.436853 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.0653327 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCAAG GCTACGGCCC GATCATTGTC GAGGGCGCCT GGCTGACCCT GACCCTGGCT 
CTGTGTTCCA TGGCGCTGGC CATCCTGCTC GGCCTCACCG GCGCGGCGCT GCGCCTCTCG
CCACTGCGCT GGCTGGCCAA TCTGGGCGAC GCCTACGCCA CGCTGATCCG GGGCATTCCC
GACCTGGTGC TGATTCTGCT GATCTTCTAC GGCGGTCAGG ACCTGGTGAA CCGCATCGCG
CCCAGTCTGG GTTACACCGC CTACATCGAC ATCAACCCCT TCGTCGCCGG CGTGTTCACC
ATGGGCTTCA TCTTCGGCGC CTACCTGTCG GAGACCTTCC GCGGCGCCTT CATGGCCATC
GCGAAAGGTC AAGCGGAGGC TGGTGCGGCG TACGGCATGA GCAGCGCCCA GGTGTTCTTT
CGCATCCTGG TGCCGCAGAT GATCCGCTTC GCCATTCCCG GTTTCACCAA CAACTGGCTG
GTGCTGACCA AGGCCACCGC GCTGATCTCG GTGGTCGGCC TGCAGGACAT GATGTTCAAG
GCCAAGAACG CCGCCGATGC CACCCGTGAA CCCTTCACGT TCTACCTCGC CGTCGCCGCC
CTCTACCTGC TGCTGACCAG CGTTTCGCTG CTGGCGCTCA GGGCCGTCGA ACGACGCTAT
TCGGTCGGCA CCCGCCTGGC CGAACTCTGA
 
Protein sequence
MLQGYGPIIV EGAWLTLTLA LCSMALAILL GLTGAALRLS PLRWLANLGD AYATLIRGIP 
DLVLILLIFY GGQDLVNRIA PSLGYTAYID INPFVAGVFT MGFIFGAYLS ETFRGAFMAI
AKGQAEAGAA YGMSSAQVFF RILVPQMIRF AIPGFTNNWL VLTKATALIS VVGLQDMMFK
AKNAADATRE PFTFYLAVAA LYLLLTSVSL LALRAVERRY SVGTRLAEL