| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1093 |
|---|
| Symbol | |
|---|
| ID | 5108066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1228640 |
|---|
| End bp | 1229329 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640502317 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001186592 |
|---|
| Protein GI | 146306127 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4215] ABC-type arginine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.436853 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.0653327 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAAG GCTACGGCCC GATCATTGTC GAGGGCGCCT GGCTGACCCT GACCCTGGCT
CTGTGTTCCA TGGCGCTGGC CATCCTGCTC GGCCTCACCG GCGCGGCGCT GCGCCTCTCG
CCACTGCGCT GGCTGGCCAA TCTGGGCGAC GCCTACGCCA CGCTGATCCG GGGCATTCCC
GACCTGGTGC TGATTCTGCT GATCTTCTAC GGCGGTCAGG ACCTGGTGAA CCGCATCGCG
CCCAGTCTGG GTTACACCGC CTACATCGAC ATCAACCCCT TCGTCGCCGG CGTGTTCACC
ATGGGCTTCA TCTTCGGCGC CTACCTGTCG GAGACCTTCC GCGGCGCCTT CATGGCCATC
GCGAAAGGTC AAGCGGAGGC TGGTGCGGCG TACGGCATGA GCAGCGCCCA GGTGTTCTTT
CGCATCCTGG TGCCGCAGAT GATCCGCTTC GCCATTCCCG GTTTCACCAA CAACTGGCTG
GTGCTGACCA AGGCCACCGC GCTGATCTCG GTGGTCGGCC TGCAGGACAT GATGTTCAAG
GCCAAGAACG CCGCCGATGC CACCCGTGAA CCCTTCACGT TCTACCTCGC CGTCGCCGCC
CTCTACCTGC TGCTGACCAG CGTTTCGCTG CTGGCGCTCA GGGCCGTCGA ACGACGCTAT
TCGGTCGGCA CCCGCCTGGC CGAACTCTGA
|
|---|
| Protein sequence | MLQGYGPIIV EGAWLTLTLA LCSMALAILL GLTGAALRLS PLRWLANLGD AYATLIRGIP
DLVLILLIFY GGQDLVNRIA PSLGYTAYID INPFVAGVFT MGFIFGAYLS ETFRGAFMAI
AKGQAEAGAA YGMSSAQVFF RILVPQMIRF AIPGFTNNWL VLTKATALIS VVGLQDMMFK
AKNAADATRE PFTFYLAVAA LYLLLTSVSL LALRAVERRY SVGTRLAEL
|
|---|
| |