| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1092 |
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| Symbol | |
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| ID | 5108065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1227933 |
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| End bp | 1228628 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640502316 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001186591 |
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| Protein GI | 146306126 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.0920336 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTCGACT TCAACCTGAT CCTCTCCAGC CTGCCGCTGT ATGCCAGCGG CCTGCTGGTC
ACCTTCGAGC TGCTGCTGAT CGCCCTCGCC CTGGGCCTGC TGCTGGCTCT GCCGCTGGCC
CTGATGCGGG TATCGCGCTC GCCGCTGGTG AACTTCCCGG CCTGGCTCTA TACCTATGTG
ATTCGCGGCA CGCCGATGCT GGTGCAGCTG TTTCTGCTCT ACTACGGCCT GGCCCAGTTC
GACGTCATCC GCGACAGCTT CATGTGGCCG TACTTTTCCA GCGCCACCTT CTGCGCCTGC
CTGGCCTTCG CCATCAACAC CAGCGCCTAC ACGGCGGAGA TTCTGGCCGG CAGCCTCAAG
GCCACACCGC CCGGCGAGAT CGAGGCGGCC AGGGCCATGG GCATGTCGCG CGCTCAGCTC
TACCGGCGCA TCCTGCTGCC TTCGGCCATG CGCCGTGCGC TGCCGCAGTA CAGCAACGAG
GTGATCATGA TGCTGCACAC CACCTCGCTG GCCTCACTGG TGACGCTCAT CGACCTCACC
GGCGCAGCCC GCACCATCAG CTCGCAGTAC TACATGCCGT TCGAAGCCTT CATCACCGCC
GGCCTGTTCT ATCTGGTGCT GACGGTGGGC CTGGTGCGTC TGTTCAAATA CGCCGAACTG
CGCTGGCTGG CCCACCTGAC CCCACGCAAG CATTAA
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| Protein sequence | MLDFNLILSS LPLYASGLLV TFELLLIALA LGLLLALPLA LMRVSRSPLV NFPAWLYTYV
IRGTPMLVQL FLLYYGLAQF DVIRDSFMWP YFSSATFCAC LAFAINTSAY TAEILAGSLK
ATPPGEIEAA RAMGMSRAQL YRRILLPSAM RRALPQYSNE VIMMLHTTSL ASLVTLIDLT
GAARTISSQY YMPFEAFITA GLFYLVLTVG LVRLFKYAEL RWLAHLTPRK H
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