| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0963 |
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| Symbol | |
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| ID | 5108821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1087901 |
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| End bp | 1088410 |
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| Gene Length | 510 bp |
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| Protein Length | 169 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640502180 |
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| Product | Tfp pilus assembly protein FimT-like protein |
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| Protein accession | YP_001186463 |
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| Protein GI | 146305998 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.347082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCACT CTCTGCAACG AGCCGCAACG CTCCCAGAAC TCCTCGTCAC CCTTACACTG
CTGACGATGC TCAGCGTCTA CGCACTTCCC AGCTTCGCCA AATGGATCAC CAACAATAAA
CAGCAGATGC TGCGTGAAAA GCTGTTTCAC AGCCTGCAGA TGGCAAGAAC CCAGGCCGTG
CTGAAGAGCC GCACCATGGA GTTCTGCGGA TCGGCGGACG CGCTCAACTG CGACGGCAAC
TGGCACAAGG GCTGGATTCT ACGTGTTGCT GCCAGCAAAG AAATCCTGGC TGTCGAACAA
TTGGCTCAAG TCGACCTGCC CTTACGCTGG AAGGGCTCGA GAGACCAGAT TCTATTTCGC
GATAACGGCC AAACTCCCTT GAGCAATGGC CGCTTCATAC TCTGCGACGA TGACGGCAAT
CTCTCCTGGC AGCTGGTAAT CAGTCGGCAG GGGCGGGTCC GCCAAGCCAC CGCCAAGGAA
AACCTGAACG AGTCCCACCG CTGCCTATAA
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| Protein sequence | MRHSLQRAAT LPELLVTLTL LTMLSVYALP SFAKWITNNK QQMLREKLFH SLQMARTQAV
LKSRTMEFCG SADALNCDGN WHKGWILRVA ASKEILAVEQ LAQVDLPLRW KGSRDQILFR
DNGQTPLSNG RFILCDDDGN LSWQLVISRQ GRVRQATAKE NLNESHRCL
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