| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0874 |
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| Symbol | |
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| ID | 5108968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 994560 |
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| End bp | 995081 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502090 |
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| Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
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| Protein accession | YP_001186374 |
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| Protein GI | 146305909 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.469255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACC TGCTGCAGCG TGCCCGCGCG GTGAAACTGG CGGTGTTCGA CGTCGATGGC
GTGCTCACCG ACGGCCGTCT GTACTTCCTC GAAGACGGCA GCGAGTTCAA GACCTTCAAT
ACGCTCGACG GCCACGGCAT CAAGATGCTG ATCAACTCCG GCGTGCGCAC CGCCATCATC
AGCGGGCGCA AGACGCCGGT GGTCGAGCGC CGCGCCAACA ACCTCGGCAT CCAGCACCTG
TTCCAGGGCC GCGAAGACAA GCTGGTCGTT CTCGACGGTC TGCTCGCCGA ACTCGGCCTA
AGCTATGAGC AGGTCGCCTA TCTGGGCGAC GACCTGCCGG ATCTTCCGGT GATGCGCCGG
GTCGGACTGG GCATGGCCGT GGCCAGCGCC GACAGCTTCG TACGCCAGCA TGCTCATGGG
GTGACCCAGG CGCGTGGCGG CGATGGCGCG GCGCGGGAAT TCTGCGAACT GATCATGCGT
GCCCAGGGCA CGCTGGATGC GGCCCAGGCC GCCTACCTGT AG
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| Protein sequence | MNDLLQRARA VKLAVFDVDG VLTDGRLYFL EDGSEFKTFN TLDGHGIKML INSGVRTAII
SGRKTPVVER RANNLGIQHL FQGREDKLVV LDGLLAELGL SYEQVAYLGD DLPDLPVMRR
VGLGMAVASA DSFVRQHAHG VTQARGGDGA AREFCELIMR AQGTLDAAQA AYL
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