| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0655 |
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| Symbol | |
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| ID | 5108985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 727025 |
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| End bp | 730318 |
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| Gene Length | 3294 bp |
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| Protein Length | 1097 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640501868 |
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| Product | transglutaminase domain-containing protein |
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| Protein accession | YP_001186155 |
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| Protein GI | 146305690 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases
[COG4196] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.559922 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000135984 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCGATTC ATGTCGCGCT GCACCACGTC ACCCACTACC GCTACGACCG TGCGGTCAAC
CTCGGGCCGC AGGTCGTGCG CCTGCGCCCG GCACCGCACA GCCGCACGCG CATCCTCTCC
TACGCCCTGA AGGTCGAGCC GGGCCAGCAC TTCATCAACT GGCAACAGGA CCCGCAGGGC
AACTACCTGG CACGCCTGGT GTTTCCCGAG AAGACCCGCG AGTTCAAGGT CGAGGTGGAC
CTGGTCGCCG AGATGGCGGT GTTCAACCCC TTCGATTTCT TCCTCGAACC CTATGCCGAG
CGCATTCCCT TCGCCTACAC CGAGGGCGAG CAGCGCGAGC TGGCGCCGTA CCTGGTCAAG
CTGCCGGCCA CGCCGCTGTT CGCCGAGTAC CTGGCCGGCA TCGAGCGCAC GCCCAAGCCC
AGCGTCGATT TCCTGGTCGA GCTGAACCAG CGCCTGTCGG CCGACATCCG CTACCTGATC
CGCATGGAGC CGGGCGTGCA GACGCCGGAG CAGTCGCTGC AGCTGGCCTC CGGTTCCTGC
CGCGACTCGG CCTGGCTGCT GGTGCAGCTG CTGCGTCATC TGGGACTGGC GGCGCGCTTC
GTTTCCGGCT ACCTGATCCA GCTCACTGCC GACGTCAAAT CCCTCGACGG CCCCAGCGGC
ACCGACAAGG ACTTCACCGA CCTGCACGCC TGGTGCGAGG TGTATCTGCC CGGCGCCGGC
TGGATCGGCC TCGACCCGAC CAGCGGCCTG TTCGCCGGTG AAGGCCATAT CCCCTTGGCC
TGCAGCCCGG AGCCGTCCTC GGCGGCGCCG ATCACCGGCG GGCTGGACGA GTGCGAGGTG
ACGTTCGAGC ACCTGATGAG CGTGGAGCGC GTGTGGGAGG CGCCGCGCGT CACCAAGCCC
TACAGCGAGG CGCAGTGGCA GGCGATCCAG GCGCTGGGGC GACGCATCGA CGATGACCTG
AGCAAGCACG ACGTGCGCCT GACCATGGGC GGCGAGCCGA CCTTCGTCGC CCTCGACTAT
CCCGATGACG ACGAGTGGAA TACCGCCGCG CTGGGGCCGA ACAAGCGCCG CCTGGCCGCC
GACCTGTTCC ATCGCCTGCG CGAGCACTAC GCCCCCAATG CGCTGGTGCA TTTCGGTCAG
GGCAAGTGGT ACCCGGGCGA GCAGTTGCCG CGCTGGTCGC TGAACTGCTT CTGGCGCCGC
GACGGCGAGC CGCTGTGGCA TGACCCCAAG CTGCTGGCCG ACGAGAAGCG CGGCTACGGT
GCCAGCGCCG ACACCGCCGC GCGTTTTCTC GCCGCGCTGG CGGCGCGTCT GGACGTGGAC
GCCGGCAACG TCTTCCCGGC CTATGAGGAC TGGTTCTACT ACCTGTGGCG CGAGCGCAAG
CTGCCGGACA ACGTCACCCC GGACGACCCG CGCCTGAGCG ACCCGCTGGA GCGCGAGCGC
CTGCGCAAGG TGTTCGACCA GGGCCTCGAC GCCGTGGTTG GCCACGTGCT GCCGCTGGCG
CGCCAGGTGG TGGGCGAGGG CTGGCAGAGC GGGCGCTGGT TCCTGCGCGA CGAGCATTGC
CGCCTGCTGC CAGGCGACTC GCCGCTGGGC TACCGTCTGC CGCTGGATTC GCTGCCCTGG
GTGAGCCAGG CCGACTACCC CTACATCAAT CCGGTCGATC CCAGTCAGGC GTTGCCGCCC
TTGCCCAGCC CGGCGCAGAT CCAGCGCCAG TTGCGCGGCG TCTGGCGCGG CGCCAGTGCC
GGCCCGCAAA GCGCGCGTCC GGCCTGCGGG CAGTCGGCTG CCAGCATCGT GCGCACCGCG
CTGTGCGCCG AGCCGCGCGA GGGCCGCCTC TACCTGTTCA TGCCGCCGCT GGCGCATCTG
GAGGACTATC TGGAGCTGGT CGCGGCCATC GAGGCGGTGG CTGCCGAGCT GAACTGCCCG
GTGCTGCTGG AAGGCTACGA GCCACCGCTG GACCCGCGCC TGCTGCACTT TCGCGTCACC
CCCGACCCCG GCGTGATCGA GGTGAACATC CACCCGGCCG CCAGCTGGGA CGAGCTGGTC
GAGCGCTGCG AATTCCTCTA CGAGGCGGCG CGTCAGTCGC GCCTGTCCAG CGAGAAATTC
ATGATCGACG GGCGCCACAC CGGCACCGGC GGTGGCAACC ATTTCGTCCT CGGCGGTGCG
ACACCGGGCG ACTCGCCTTT CCTGCGGCGT CCCGACCTGT TGCGCAGCCT GATCAGCTAC
TGGCACAACC ACCCGTCGCT GTCCTACCTG TTCAGCGGCC TGTTTATCGG CCCGACCTCG
CAGGCGCCAC GCGTGGACGA GGCGCGCAAC GACGCCCTGT ACGAGCTGGA AATCGCCTTC
GCGCAGATGC CCGAGCCGGG CCGCGATTGC CCGCCCTGGC TGGTCGACCG CCTGCTGCGC
AACCTGCTGG TGGACGTCAC CGGCAACACC CACCGCGCCG AGTTCTGCAT CGACAAGCTG
TACTCGCCGG ACTCGGCCAG CGGTCGCCTC GGCCTGCTCG AACTGCGCGC CTTCGAGATG
CCGCCGCACG CGCATATGAG CCTGGCTCAG CAACTGCTGC TGCGCGCGCT GATCGCGCGG
TTCTGGCAGG AGCCCTACCG CCCGGCCAGG CTGGTGCGCT GGGGCACCGA GCTGCACGAT
CGCTTTCTCC TGCCGCACTT CGTCGAGCAG GACTTCGCCG ATGTGCTGCA GGAGCTGTCG
GCCTTCGGCT ATCCGCTGCG CGCCGAGTGG TTCGCCCCGC ACCTGGAGTT TCGCTTTCCC
AAGGCCGGCG ACTTCGCGGT CAAGGGCATC GACCTGGAGC TGCGCCAGGC CCTGGAGCCC
TGGCATGTGC TGGGCGAGGA GGGCGCCATC GGCGGTACCG TGCGTTACGT CGACTCGTCG
CTGGAGCGAA TGCAGGTGAA GGTGAACGGC ATGGCGCCGG ATCGCTACGT GCTGACCTGC
AACGGCGTGC CGGTGCCGCT GCGACCGACG GGCAAGGTCG GCGAGTTCGT CGGCGGCGTG
CGCTTCCGTG CCTGGCAGCC GGCCAGCTGT CTGCAGCCGA CCATCGGCGT GCACGCGCCG
CTGGTGTTCG ACCTCGTCGA TACCTGGATG CAGCGCTCGC TGGGCGGTTG CCAGTACCAT
GTGGCGCATC CGGGCGGGCG CAACTACGAC AGCCTGCCGG TCAACGCCTA CGAGGCCGAG
AGCCGGCGCC TGGCGCGCTT CTTCCGCCTG GGCCACAGTC CGGGCAAGCG CCCCGTCATG
CAGCCGATAG ACAATAATGA ACTGCCGATG ACCCTGGATC TGCGTCGTAG TTGA
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| Protein sequence | MSIHVALHHV THYRYDRAVN LGPQVVRLRP APHSRTRILS YALKVEPGQH FINWQQDPQG
NYLARLVFPE KTREFKVEVD LVAEMAVFNP FDFFLEPYAE RIPFAYTEGE QRELAPYLVK
LPATPLFAEY LAGIERTPKP SVDFLVELNQ RLSADIRYLI RMEPGVQTPE QSLQLASGSC
RDSAWLLVQL LRHLGLAARF VSGYLIQLTA DVKSLDGPSG TDKDFTDLHA WCEVYLPGAG
WIGLDPTSGL FAGEGHIPLA CSPEPSSAAP ITGGLDECEV TFEHLMSVER VWEAPRVTKP
YSEAQWQAIQ ALGRRIDDDL SKHDVRLTMG GEPTFVALDY PDDDEWNTAA LGPNKRRLAA
DLFHRLREHY APNALVHFGQ GKWYPGEQLP RWSLNCFWRR DGEPLWHDPK LLADEKRGYG
ASADTAARFL AALAARLDVD AGNVFPAYED WFYYLWRERK LPDNVTPDDP RLSDPLERER
LRKVFDQGLD AVVGHVLPLA RQVVGEGWQS GRWFLRDEHC RLLPGDSPLG YRLPLDSLPW
VSQADYPYIN PVDPSQALPP LPSPAQIQRQ LRGVWRGASA GPQSARPACG QSAASIVRTA
LCAEPREGRL YLFMPPLAHL EDYLELVAAI EAVAAELNCP VLLEGYEPPL DPRLLHFRVT
PDPGVIEVNI HPAASWDELV ERCEFLYEAA RQSRLSSEKF MIDGRHTGTG GGNHFVLGGA
TPGDSPFLRR PDLLRSLISY WHNHPSLSYL FSGLFIGPTS QAPRVDEARN DALYELEIAF
AQMPEPGRDC PPWLVDRLLR NLLVDVTGNT HRAEFCIDKL YSPDSASGRL GLLELRAFEM
PPHAHMSLAQ QLLLRALIAR FWQEPYRPAR LVRWGTELHD RFLLPHFVEQ DFADVLQELS
AFGYPLRAEW FAPHLEFRFP KAGDFAVKGI DLELRQALEP WHVLGEEGAI GGTVRYVDSS
LERMQVKVNG MAPDRYVLTC NGVPVPLRPT GKVGEFVGGV RFRAWQPASC LQPTIGVHAP
LVFDLVDTWM QRSLGGCQYH VAHPGGRNYD SLPVNAYEAE SRRLARFFRL GHSPGKRPVM
QPIDNNELPM TLDLRRS
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