| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0609 |
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| Symbol | |
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| ID | 5109571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 670217 |
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| End bp | 672100 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640501820 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_001186109 |
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| Protein GI | 146305644 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCAC AACAACAAAA GAACCTGAGT GAATCGGCTC AGGTCGATCA GCAGTCGGTA
CAACCCTTTC CCCGTTCGCA GAAGGTCTAT GTCCAAGGCT CGCGCCCGGA CATCCGCGTG
CCGATGCGCG AAATCAGCCT GGACGTGACG CCGACCGACT TCGGTGGCGA GATCAACGCC
CCGGTCACCG TCTATGACAC CTCCGGCCCC TACACCGACC CGAACGTCAC CATCGACGTG
CGCAAGGGCC TGAGTGATGT GCGCAGCGCC TGGATCGAGG ATCGCGGCGA CACCGAGAAG
CTGCCGGGCC TATCCTCCGA GTTCGGCCAG CGCCGTCTGA ACGACGCCGA GCTGTCGGCC
ATGCGCTTCG CCCACGTGCG CAACCCGCGC CGGGCCCGCG CCGGGCACAA CGTCAGCCAG
ATGCACTACG CCAAGAAAGG CATCATCACG CCGGAGATGG AGTTCGTCGC CATCCGCGAG
AACATGAAGC TGGCCGAAGC CCGCGAAGCC GGCCTGCTCA ATGAGCAGCA CGCCGGCCAC
AGCTTCGGCG CCAGCATCCC GAAGGAAATC ACCCCCGAGT TCGTGCGCAG CGAAGTCGCC
CGCGGCCGCG CCATTATTCC GGCCAATATC AACCACGTGG AGCTGGAGCC GATGATCATC
GGCCGCAACT TCCTGGTGAA GATCAACGGC AATATCGGCA ACAGCGCCCT GGGCTCCTCC
ATCGAGGAAG AAGTGGCCAA GCTGACCTGG GGCATCCGCT GGGGCTCGGA CACGGTGATG
GACCTGTCCA CCGGCAAGCA TATCCACGAG ACCCGCGAGT GGATCATCCG CAACTCGCCG
GTGCCGATCG GCACCGTGCC GATCTACCAG GCGCTGGAGA AGGTCGGCGG CATCGCCGAG
GACCTGACCT GGGAGCTGTT CCGCGACACC CTGATCGAAC AGGCCGAACA GGGCGTGGAC
TACTTCACCA TCCACGCCGG CGTGCTGCTG CGCTACGTGC CGCTGACCGC CAAGCGCGTC
ACCGGCATCG TCAGCCGCGG CGGCTCGATC ATGGCCAAGT GGTGCCTGGC GCATCACAAG
GAAAACTTCC TCTACACCCA TTTCGAAGAC ATCTGCGAAA TCATGAAGGC CTACGACGTG
TCCTTCTCCC TGGGTGACGG CCTGCGCCCC GGCTCCATCG CCGATGCCAA CGACGCCGCG
CAGTTCGGCG AGCTGGAGAC CCTCGGCGAG CTGACCAAGA TCGCCTGGAA ACACGACGTG
CAGTGCATGA TCGAAGGCCC CGGCCACGTG CCGATGCAGC TGATCAAGGA GAACATGGAC
AAGCAGCTGG AATGCTGCGA CGAGGCACCG TTCTATACCC TCGGCCCGCT GACCACCGAT
ATCGCCCCCG GCTACGACCA CATCACCAGC GGCATCGGCG CAGCGATGAT CGGCTGGTTC
GGCTGCGCCA TGCTCTGCTA CGTCACGCCC AAGGAGCACC TGGGCCTGCC GAACAAGGAT
GACGTGAAGA CCGGCATCAT CACCTACAAG ATCGCGGCCC ACGCAGCGGA CCTGGCCAAG
GGGCACCCGG GCGCGCAGAT TCGCGACAAC GCCCTGTCCA AGGCGCGCTT CGAGTTCCGC
TGGGAAGACC AGTTCAACCT GGGCCTGGAC CCGGACACCG CGCGTGCCTT CCACGACGAG
ACGCTGCCCA AGGACTCGGC CAAGGTGGCG CACTTCTGCT CCATGTGCGG GCCGAAGTTC
TGCTCGATGA AGATCACCCA GGAGGTGCGC GACTATGCTA AGGAACAGCG TATCGACGCC
GTCGACCTGG ACGCCGAACA GGGCATGCAG GCCAAGGCGG CGGAGTTCAA GGCGCAGGGC
AGTCAGCTGT ACCAGAAGGT CTGA
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| Protein sequence | MSAQQQKNLS ESAQVDQQSV QPFPRSQKVY VQGSRPDIRV PMREISLDVT PTDFGGEINA
PVTVYDTSGP YTDPNVTIDV RKGLSDVRSA WIEDRGDTEK LPGLSSEFGQ RRLNDAELSA
MRFAHVRNPR RARAGHNVSQ MHYAKKGIIT PEMEFVAIRE NMKLAEAREA GLLNEQHAGH
SFGASIPKEI TPEFVRSEVA RGRAIIPANI NHVELEPMII GRNFLVKING NIGNSALGSS
IEEEVAKLTW GIRWGSDTVM DLSTGKHIHE TREWIIRNSP VPIGTVPIYQ ALEKVGGIAE
DLTWELFRDT LIEQAEQGVD YFTIHAGVLL RYVPLTAKRV TGIVSRGGSI MAKWCLAHHK
ENFLYTHFED ICEIMKAYDV SFSLGDGLRP GSIADANDAA QFGELETLGE LTKIAWKHDV
QCMIEGPGHV PMQLIKENMD KQLECCDEAP FYTLGPLTTD IAPGYDHITS GIGAAMIGWF
GCAMLCYVTP KEHLGLPNKD DVKTGIITYK IAAHAADLAK GHPGAQIRDN ALSKARFEFR
WEDQFNLGLD PDTARAFHDE TLPKDSAKVA HFCSMCGPKF CSMKITQEVR DYAKEQRIDA
VDLDAEQGMQ AKAAEFKAQG SQLYQKV
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