| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0542 |
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| Symbol | |
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| ID | 5108166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 580941 |
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| End bp | 582005 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640501755 |
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| Product | type IV pilus assembly protein PilM |
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| Protein accession | YP_001186044 |
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| Protein GI | 146305579 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTAGGGC TCTTCACTAA GAAAGCGAAT ACGCTGCTGG GGATCGATAT CAGCTCGACT
TCGGTCAAGC TCCTCGAACT GAGTCGCTCG GGAAGCCGCT ACAAGGTAGA GGCTTACGCA
GTCGAGCCGC TCCCGCCAAA CGCGGTAGTT GAGAAGAACA TCGCCGAGCT GGAGGGGGTC
GGTCAGGCGC TGTCACGCGT CTTGGCCAAA GCCAAGACCG GCGTCAAGAC CGCAGCCGTA
GCGGTCGCCG GTTCGGCGGT CATCACCAAG ACCATCGAAA TGGAGGCCGG CCTTTCCGAG
GATGAACTGG AGAACCAGCT GAAGATCGAG GCTGACCAGT ACATTCCTTA TCCGCTCGAA
GAAGTCGCGA TCGATTTCGA GGTTCAGGGG CCTGCTGCGC GCAATCCTGA GCGTGTCGAG
GTGCTCCTCG CCGCGTGCCG CAAGGAGAAC GTCGAAGTTC GCGAGGCTGC GCTGGCGCTT
GCCGGCCTGA CGGCCAAGGT GGTCGACGTC GAGGCCTATG CGCTGGAGCG TGCTTACAGT
CTGCTGGAGG CGCAGCTGGG TGGCGGCCAC GACGAGCTCA CCGTGGCTGT CGTCGATATC
GGCGCCACCA TGACCACGCT GAGCGTGCTG CACAACGGTC GCACCATCTA TACCCGCGAG
CAGCTCTTCG GTGGCAAGCA GCTGACCGAG GAGGTGCAGC GTCGTTATGG TCTTTCCGTC
GAAGAAGCCG GCCTTGCCAA GAAGCAAGGT GGTCTTCCGG ATGACTACGA CAGCGAGGTT
TTGCAACCGT TCAAGGAAGC CGTCGTTCAG CAGGTTTCGC GTTCCCTGCA GTTCTTCTTT
GCTGCTGGCC AGTTCAACGA TGTCGACTAC ATCCTTCTGG CTGGTGGAAC CGCGTCCATT
CCCGATCTTG ATCGACTGAT CCAGCAAAAG ATCGGCACGC AGACGCTAGT GGCCAATCCC
TTTGCCGATA TGGCGCTTAG CAGCAAGGTC AACGCCGGTG CGCTGGCCAG TGACGCGCCG
GCACTGATGA TTGCCTGTGG TCTGGCGATG AGGAGTTTCG ACTGA
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| Protein sequence | MLGLFTKKAN TLLGIDISST SVKLLELSRS GSRYKVEAYA VEPLPPNAVV EKNIAELEGV
GQALSRVLAK AKTGVKTAAV AVAGSAVITK TIEMEAGLSE DELENQLKIE ADQYIPYPLE
EVAIDFEVQG PAARNPERVE VLLAACRKEN VEVREAALAL AGLTAKVVDV EAYALERAYS
LLEAQLGGGH DELTVAVVDI GATMTTLSVL HNGRTIYTRE QLFGGKQLTE EVQRRYGLSV
EEAGLAKKQG GLPDDYDSEV LQPFKEAVVQ QVSRSLQFFF AAGQFNDVDY ILLAGGTASI
PDLDRLIQQK IGTQTLVANP FADMALSSKV NAGALASDAP ALMIACGLAM RSFD
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