| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0529 |
|---|
| Symbol | |
|---|
| ID | 5108153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 563935 |
|---|
| End bp | 564792 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640501742 |
|---|
| Product | poly(3-hydroxyalkanoate) depolymerase |
|---|
| Protein accession | YP_001186031 |
|---|
| Protein GI | 146305566 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR02240] poly(3-hydroxyalkanoate) depolymerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTCAT CTTTCGTATT TCGCACCATC GACCTCGATG GGCAAACCAT CCGCACCGCG
GTGCGCCCCG GCAAGGGGCC GCTGGTGCCG CTGCTGATCT TCAACGGCAT CGGCGCCAAC
CTGGAGCTGG TGATGCCCTT CGTCGCCGCA CTCGACCCGG ACCTGGAAGT GATCGCCTTC
GACGTGCCCG GCGTCGGTGG CTCGTCCACG CCCACCACGC CCTATCGCTT TCCCGGGCTG
GCCAAGCTGG CCGCGCGCAT GCTCGATTAC CTCGACTACG GCCAGGTCAA TGCCATCGGC
GTGTCCTGGG GTGGGGCCCT GGCTCAGCAG TTCGCCCATG ACTACCCGGA ACGCTGCAAG
AAGCTGATCC TCGCCGCCAC CTCGGCCGGC GCGGTGATGG TGCCGGGCAA GCCCAAGGTG
CTCTGGCGCA TGGCCAGTCC GCGGCGCTAC ATCCAGCCGT CCTATGGCGT GCGCATCGCC
CCGGATATCT ACGGCGGTGC CTTCCGCCGC GATCCCAAGC TGGCCATGGC ACATGCCAGC
AAGGTGCGCT CCGGCGGCAA GATGGGCTAC TACTGGCAGC TGTTCGCCGG CCTCGGCTGG
ACCAGCATCC ATTGGCTGCA CAAGATTCGT CAGCCCACCC TGGTGATGGC CGGCGACGAC
GATCCGCTGA TCCCGCTGAT CAACATGCGC CTGCTGGCCT GGCGTATCCC CAACGCCGAG
CTGCACGTGA TCGACGACGG CCACCTATTC CTGGTGACCC GCGCCGAAGC CGTGGCGCCC
ATCATCATGA AGTTTCTCGA GGAGGAACGT CAGCGTGCGG TGATGCACCC GCAGCCTGCA
CCATTGCGCC AGCATTGA
|
|---|
| Protein sequence | MPSSFVFRTI DLDGQTIRTA VRPGKGPLVP LLIFNGIGAN LELVMPFVAA LDPDLEVIAF
DVPGVGGSST PTTPYRFPGL AKLAARMLDY LDYGQVNAIG VSWGGALAQQ FAHDYPERCK
KLILAATSAG AVMVPGKPKV LWRMASPRRY IQPSYGVRIA PDIYGGAFRR DPKLAMAHAS
KVRSGGKMGY YWQLFAGLGW TSIHWLHKIR QPTLVMAGDD DPLIPLINMR LLAWRIPNAE
LHVIDDGHLF LVTRAEAVAP IIMKFLEEER QRAVMHPQPA PLRQH
|
|---|
| |