| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0456 |
|---|
| Symbol | |
|---|
| ID | 5108375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 484747 |
|---|
| End bp | 485631 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640501669 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001185958 |
|---|
| Protein GI | 146305493 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTC ACCACCTCAA GGTCTTTCTC GCCGTCGCTG AGGCCGGCAG CATCAGCGCC
GGTGCCGAGC GCCTGCATAT CAGCCAGCCG GCAGTGACTC GGGAGATTCG GGAGCTGGAG
GCCAACCTCG ACCTGCGCCT GTTCGACCGT CTGCCGCGCG GCGTGCAGCT GACCGAAGGC
GGCCAGCGTC TGCTCGATTA CGCGCGGCGC ATCTTCGCCC TGGAACAGGC GGCCGAGCGC
GACCTGCGCG ATTTCGCCCA GCTGGAGCAG GGCGAACTGC ACCTGGGCGC CAGCGCCACG
CTCGGCGCCT ACCTGCTGCC GCCGCTGATC AGCCGCTTCC GCGCCCTGCA TCCGCAGATC
TTCGTCAGCC TGGAGGTGAG CAATACCGAG GCGGTGACCC GCCAGCTGGA TGACGGGCGC
ATCAGCCTCG GCTTCGTCGA AGGGCCTTTC GCCCAGGCCG ATTACGACCA TCGCCTGCTG
GCTCGCGACG CCTTGCTGCC GGTGGTGGCG CCCAGGCATC CGCTGGCCAG AACAGCCGCG
CCCTTGCAGG CCAGCGAGCT GCAGGCCTAC CCGCTGTACA TGCGCGAACC CGGCTCCGGC
GCGCGCGCCA GCGTCGAGCA TGCCTATCGC GTCCATGGTC TGGAGCCTCG CGCCGGCATG
GCCATCGGCA GCACCGAAGC GCTCAAGCGC CTGCTTGCCG ATGGCCAGGG CATCGCCTGG
CTGTCGCAGC GGGTGGTCGA GCGCGAACTG GCCAGCGGCG AACTGCAGCG CCTGACCGTG
CAGGACCTGC AGATCGAGCG CGAGCTGCAC GTGCTGTGGC GCCCCGGTGC CAGCCTGAGC
CCGGCGCCGG CCGCTTTTCT GGCGCTGAGC GAGCCGCCGC ACTAG
|
|---|
| Protein sequence | MNLHHLKVFL AVAEAGSISA GAERLHISQP AVTREIRELE ANLDLRLFDR LPRGVQLTEG
GQRLLDYARR IFALEQAAER DLRDFAQLEQ GELHLGASAT LGAYLLPPLI SRFRALHPQI
FVSLEVSNTE AVTRQLDDGR ISLGFVEGPF AQADYDHRLL ARDALLPVVA PRHPLARTAA
PLQASELQAY PLYMREPGSG ARASVEHAYR VHGLEPRAGM AIGSTEALKR LLADGQGIAW
LSQRVVEREL ASGELQRLTV QDLQIERELH VLWRPGASLS PAPAAFLALS EPPH
|
|---|
| |