| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0062 |
|---|
| Symbol | |
|---|
| ID | 5106247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 58342 |
|---|
| End bp | 59982 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640501278 |
|---|
| Product | sulphate transporter |
|---|
| Protein accession | YP_001185568 |
|---|
| Protein GI | 146305103 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0659] Sulfate permease and related transporters (MFS superfamily) |
|---|
| TIGRFAM ID | [TIGR00815] high affinity sulphate transporter 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATCCG GCGCTACGCT AGGCTCCTGC GAGCTGCCCG AATCGAATCC AACCTGCCTG
GCCCCAACGA TGCCGCTACC CGACCTGCAG ACTCTTTTGC CCTTCCTGCG CTGGCTGCCC
GGCACCAGCC GCAAGACCCT CGGCAACGAT CTGCTGGTCG GCCTCACCGG CGCGGTGCTG
GCCCTGCCGC AGTCGCTGGC CTATGCGCTG ATCGCCGGCC TGCCGGCCGA GTACGGCCTG
TACGCAGCCA TAGTGCCGGT GATCGTCGCC TGCCTGTGGG GCTCGTCCTG GCACCTGATC
TGCGGGCCGA CGGCGGCCAT CTCCATCGTC CTGTTCACCA GCGTCAGCCC GCTGGCCAAA
GCCGGCAGCG AGCAGTTCAT CGCCCTGGTG CTGCTGCTGA CCTTCCTCGC CGGGCTGTTC
CAGTGGCTGC TCGGCCTGCT GCGCTTCGGC GCCCTGGTCA ACTTCGTCTC GCAATCGGTG
GTGCTCGGCT TCACCCTGGG CGCGGCGCTG GTCATCGCCA TCGGCCAGAT TCCCAATCTG
CTGCGCGTGG AGATCGTCAG CCAGGCCACC GCCCTGGCCA GCCTGCTGCA GATCGGTCAG
CACCTGAACG ACGTGCATTG GCCAAGCCTG GCCCTGGCCG CCTTCACCCT GCTGCTCTGC
CTGGCGGTAC GACGCCTGTG GCCGAAGGCG CCGGCGTTGC TGCTCGGCCT GGTCGCCGGC
AGCGCGCTGG TGTGGCTGCT GCCGGAACGC CTGGTCGGCG GCATCGCCCT GGTCAGCGCC
TTCGAAGGCG GCCTGCCGCC CTTCACGCCG CTGCAGTTCG ACCTCAACAG CCTGCTGCAG
CTGCTGCCGG CGGCGGTGGC CTGCGGCATG CTCGGGCTGG TCACCAGCCT GTCCATCGCC
CGCGCGCTGG CGGTCAAATC GCACCAGTTC CTCGATGCCA ATCAGGAAGT GCGCGCCCAG
GGGCTGTCGA ACATGCTCGG GCCCTGGTTC GCCGGTTCGC TGTCGGCCGG CTCCTTCACC
CGCTCGGCGC TCAACCTGCA GGCCGGCGCG CGTACGCCGC TGGCCGGGGT GTTCTCGGCG
TTGCTGGTGG CGCTGTTCGC CCTGTTCGGC GCAGCGCTGC TGGCGCATAT TCCGCTGCCG
GTGATGGCCG CCGGCATCCT GCTGATCTGC TGGGGCCTGG TCGATCTGGC GGCGATCCGC
GCCCTGCGCC GCGTCAGCCG CGCCGAGTTC GCGGTGATGC TGCTGACGCT GCTGGCCACC
CTGCTGCTGG AACTGCAGAC GGCAATCTAC GCCGGGGTGC TGGCCTCGCT GTTCTTCTAC
CTCAAGCGCA CCTCGCAACC GCGCGTGCGC CTGTGGCAGG ACGGCGACGA CGAGGTGCTG
CGCATCGAGG GCTCGATCTT CTTCGGCGCC TGCCACTACA TCCAGCAGCT GCTGCAGCGC
AGCCGCGGCC AGCGCCTGGT GATCGACGCG CGGCATATCA ACTTCATCGA CTACGCCGGG
GTGGAGATGC TGCACCAGGA GGCACGCCGC CTGCTGGCCG GACAGCGCAG CCTGGTGTTG
CGCCAGGCCC GGCCGCAGGT GGTGGAGGAG ATTCTCAAGC TCGAAGGCGC TGAACGCTGT
CCGGTGCAGT TCGAGGATTG A
|
|---|
| Protein sequence | MRSGATLGSC ELPESNPTCL APTMPLPDLQ TLLPFLRWLP GTSRKTLGND LLVGLTGAVL
ALPQSLAYAL IAGLPAEYGL YAAIVPVIVA CLWGSSWHLI CGPTAAISIV LFTSVSPLAK
AGSEQFIALV LLLTFLAGLF QWLLGLLRFG ALVNFVSQSV VLGFTLGAAL VIAIGQIPNL
LRVEIVSQAT ALASLLQIGQ HLNDVHWPSL ALAAFTLLLC LAVRRLWPKA PALLLGLVAG
SALVWLLPER LVGGIALVSA FEGGLPPFTP LQFDLNSLLQ LLPAAVACGM LGLVTSLSIA
RALAVKSHQF LDANQEVRAQ GLSNMLGPWF AGSLSAGSFT RSALNLQAGA RTPLAGVFSA
LLVALFALFG AALLAHIPLP VMAAGILLIC WGLVDLAAIR ALRRVSRAEF AVMLLTLLAT
LLLELQTAIY AGVLASLFFY LKRTSQPRVR LWQDGDDEVL RIEGSIFFGA CHYIQQLLQR
SRGQRLVIDA RHINFIDYAG VEMLHQEARR LLAGQRSLVL RQARPQVVEE ILKLEGAERC
PVQFED
|
|---|
| |