| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4149 |
|---|
| Symbol | |
|---|
| ID | 9140869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 5319225 |
|---|
| End bp | 5320853 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003632159 |
|---|
| Protein GI | 296124381 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAGTC GTGCCGATGT TTTTTCAGCT GGCTTATGGC TTCGATTTGG TCGGCCCTCC
CGGTATCTGT TGTTTTTGCT GGCAGGCTGT TCACTGATGA TTTCGGGCTG CGGCGATCGG
CCAGCCGTCA GTCAACCTGC GGGCGATCAA AATGCAGATC GTCAGGTGGC CAGCCCTGCG
TCATCACAGG TAACTTCAAA CAGCCAGGAC TCAACGACTT CCAGAACGAG TCAAGCCGCC
CAGCGACGAG TGGCAGAGAT TGCCAGCAAT ATGCAGGATG AGCCGGAGAT GGTCGTCCCG
GATGCGGATC CTCAGGCGTT TGCTTCATCG CAGACGGGCG GAGAATCGAA CCCCCGTGCG
CAAATGGCTG CACGGCCTGC CGGGCCAGAA CTGGCCACTC TTCCCGCTCC AGCGAAAACT
CCAGCAGAAC TCGAAGCGCT GGGGTTTCGG GTGATCACTT CGCCGCACAT CGTCATCGTG
ACCGATCTTC CACTAGCCGA AGTTGCCAAA CTTCCCGAAC TGGGGGAAGC GCTGCTCCAG
CGACTGCAGA GCGATTTCCA CATCAAGTGG CCCGAGAATC AGCAATTGAC GGGCTATGTC
ATGTCTGACA TGACGAGCTT CCGCGAGACA GGGCTGTTGC CAGAAGATTT GCCGGGCTTT
CTGCATGGTC GACATCGGGG GAGTGAGTTC TGGATGAAAA TGCAGGCCAC GCCTTACTAC
TTGAGGCATC TATTCCTGCA TGAGCTTACT CACGTGGTGA CTTTGATTGG AGTGCGTGAA
GATTTGCCTG TGGGATTTAA GGAAGGGATT GCCGAGTGGT ACGCCACAAA CTTTATAGAC
GAAGCGGGCA AGCCCTATTT TGGAGTGCTT CCCGGCAGGC CCGAAGATTT CGCTGGCTGG
GGGCGGATTG GCCTGATTCA GGAAGATCTT GCTACAGGAA AAGGACGTTC GTTTGCTGAT
TTACTGACAA TTGACGCCCA CGAATTTTCT ACGAACGACG ACTATGCCTG GGCCTGGCTC
TGGATTCAGT TCTGCAGCCA GCATCCCACC TATGGGCCGG ATTTCGCCAA GCTACGAACA
TCTCGAACAT TGGAGGAATT CCTCCAATCG GCCCGCCGAG CTGATCAGAC ATCGACGACA
TGGCTTTCCA GCGATTGGTT ACGGCTCTCG ACAGATATTT GTTTTGGTTA TGATACCGCT
TTGGCTGCGA CGTTACATCG CCCCATGGAA CCCCTGGCGG TTCAACCGGT CACACGCTCG
ATTGCAGCGA AGGCGGGCTG GCAATCGACG GGCCTGCTGG TTCCTCAAGG CACCACGATT
CGTCTGCGTG CCAAAGGACA AGTCGAGCTG AATCGCACCA CTCGCCCGTG GATTTCGCAA
CCACAAGGGA TCTCGGTGGA TTATGCGAAT GGCCAGAAAC TGGGACGGCT CATGGCCTGG
TGGGGGATTC CTGACCTGCC ACTCACAGCC CACGGTGCGG AATTCACAGA AGTCATTCCC
GCAGGTCAAA TCGCCCGACT GACCGCCCCT CGCGAGGCAG TGCTCTTTCT GCGCATCAAC
GACCATTTCT ACGATCTCGC CAATAATTCG GGGGAGTATG AGGTGGTGAT TGAGCAGGAT
GTGGAGTGA
|
|---|
| Protein sequence | MSSRADVFSA GLWLRFGRPS RYLLFLLAGC SLMISGCGDR PAVSQPAGDQ NADRQVASPA
SSQVTSNSQD STTSRTSQAA QRRVAEIASN MQDEPEMVVP DADPQAFASS QTGGESNPRA
QMAARPAGPE LATLPAPAKT PAELEALGFR VITSPHIVIV TDLPLAEVAK LPELGEALLQ
RLQSDFHIKW PENQQLTGYV MSDMTSFRET GLLPEDLPGF LHGRHRGSEF WMKMQATPYY
LRHLFLHELT HVVTLIGVRE DLPVGFKEGI AEWYATNFID EAGKPYFGVL PGRPEDFAGW
GRIGLIQEDL ATGKGRSFAD LLTIDAHEFS TNDDYAWAWL WIQFCSQHPT YGPDFAKLRT
SRTLEEFLQS ARRADQTSTT WLSSDWLRLS TDICFGYDTA LAATLHRPME PLAVQPVTRS
IAAKAGWQST GLLVPQGTTI RLRAKGQVEL NRTTRPWISQ PQGISVDYAN GQKLGRLMAW
WGIPDLPLTA HGAEFTEVIP AGQIARLTAP REAVLFLRIN DHFYDLANNS GEYEVVIEQD
VE
|
|---|
| |