| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3688 |
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| Symbol | |
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| ID | 9140406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | - |
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| Start bp | 4744552 |
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| End bp | 4748961 |
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| Gene Length | 4410 bp |
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| Protein Length | 1469 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_003631699 |
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| Protein GI | 296123921 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACGCCA TCTCTGATCG TGCATCTTCC CACCGGCAAT ACCTGCCACA CCTCCTTTCC
TATGGTAGTC ACATGCTGAC ATCAATCCCT CCCGGATTGC GGGCTGTAAG AACATTATTT
CCACAGACTC AGAATAGTGT CTGGTGGGGT TGTGCTCAGT TGCTGCTGGG AACGGCCTGC
ACACTGCTCA GTCCGAGCGA GATGGTCTAT GGCCGCGAGC CGATTGTGCC ACTGACGAAT
GGCCAGCAGA AGGTTTCGCC GCACCATACC AACTCTGGTT TTGGAGTGAA CGCTCCTGCT
GTCGGCGATC AGCAGGATGC GGGACCTCGC GTGAAGCTCA ATCACTGGGG CTCGAACTGG
CAGAAAGTCT TCGAGCAGCT TGCCGAAGAG TCGCAGTCTG AGTTGATTAT GGAACGTGTC
CCCACGGGCC GCTTTACACG CATTGATAAG CAGGAATACT CGCGGGCTGA TGCCATTCGC
ATTCTCAACA AAGAGATCGA ACCTCTCGGC TTTCGACTGA TTGAAAAAGG GAAGTTCATC
GTCCTGATGG ATTTGCCCAG CATTCGCCCC AAGTATCAGC CTGTCGAATT GCATACATCG
CCTTATACGC CGGCCCAGCA GCTCCAGGCG CAGCAAAGCC AGAGTGCTTA CGGGCCACCA
TTACAGACAC CGGGCATGCA ACCAGCCCGG CCTGTCCAGC CATTACCAAC TGGCCCTTAT
GCTCAAGTTC CTCCCGGGAT GAGTGCGCAG CATCCATTGT CTGCACCCTA TGAAACGGCT
CCCACATTAC ATCCGGGACA GATTCAGCAG ATCAGTGGTC AGCAAATTGC CGGTCTGCCA
AGCCAGTCAC CTGTGGCCCC TCTTCCCGTT GCTAAGACAC CACAAAACTT CATGCCCCAG
AACGTCGTAA CCCAGAACGT CATGACACTG GGACATGAAG TACCCGCTGC GGCCAATACC
CATCCGTTGT TACAACCTGT GGCACCAGCT GCGGGGCATC CCCTCGCAGC CAGTGAGATC
AAGCCTGTCC CACAGCCAGT GGCCAAACCA CCGGTAGCGA TTGCCTTCAA ACCCCGACAG
CACAAAGCGG CTGAGCTGGC GAAAGTGCTG TATCGCTCGC ACAAGGAAAA TGCCCGGCTG
GTTGATGCCG GTCGCGCGGG CAAGCCGGCG TTCTCTGTCT CGAGGCTTCC CGGTAAGAGT
ACAACGGCGA TTGAATTCAT GGTTTCGATC GATGATGAGC GCGATCAGCT CTACGTCGAT
GGTTCCGAAG CCGTCGCCCG CGGAGTGGTC GATCTGTTGA CTTCGCTTGA TACTAAGGGC
GATTGGCCAA GCGATGCGAA GATCGTTCCA ACGACTCCTC AGGCAGCGAT CATGCTGGCC
CAGTATCAGC CCGATCTGGA AAAGATGCGC CGGCAGAATC GACTGACTGT CGCCCAAGCA
GGCAATACTC CCGCTGCCAA TCCGCAGCGG GAAAATGATG ATCCTTTTGC CCCGGCGCCT
GCACAGGCCA AACCCGAGGC AGCACAGCCA CCTCGTGGCA ACTCGGCGAT TTCTGATGTC
GTGACCAATC TCAAAGGTGA TGTGAACATC GAAGCGATTG GGGATCTGGG TGTGCTGATT
CTGCGTGGTA ATGAAGCCGA CGTGGAGCAG GTCATGAAAG TCATTCGAGA GCTCGAAGCT
CTCAGTGAGA ATACCGCTCC TCAGTTGCAT GTGCTCTACC TGAGTCACAC CGATTCACCC
GCGATGAGTG AACTGCTCAC GCTGGTGTTC GACAGCTTGG CGAAGTTCCC TGGCCGGGCG
ACACAACCCC GCCAGAATGT GGCGATTATC CCTGTCGATA CCCCAAATGC GTTGATCATT
GTGGCACCAA AGACCGATCT CGATTCGATT CTGGAACTGG CAGAAGAACT CGATCAGCCG
ACAGATCCGG AATCGGAATT TGAAGTCTTC AGTCTGAAGA CCGCAGTCGC TTCACAGGTG
GTGACGAATA TCACGGCTTT CTATGCCACC AGAGTTGGTT TAGGCGCCCG CGTGCTCGCG
ATTGCCGATC CTCGTTCAAA CTCGGTGATT GTGCGGGCTC GTCCACGTGA TCTGGATCAG
GTGAAGGCGT TGATTGCCAA GGTCGATCGC GACGAAATGG CCGCTGTCAA CCAGGTCAAG
ATCATTCCTT TGAAGAACGC CGTCGCTGTC GAACTCTCGG CTGTGATCAA TGCGGCCATT
CAAAGTGTGC TTTCGCCTCC ATCGAATCAG GCGGCGAACC AGGGTGGTGC CAACAGTGGT
TTGGGTGGCA ACCAGGTGGC AGAAGATTTC CGACAGGTCA GACCCGCAAT TCTGTCCTTC
CTGGCGGGTG ATAAAAAAGC CCTGCGTTCC GGGATGCTGG CCGACATTCG CATTACGCCC
GATACGCGCA TGAACAGTCT GATTCTTTCA GCTCCTGAGC AAAGTATTCC GCTGCTGGAA
GAACTGATTC GTCAGCTCGA TCAACCCACA GCAGCAGTGG CTGAGATCAA GGTGTTTACG
CTGACAAATG CTGATGCCTC ACAACTGGTG ACACAGTTGC AGCAACTCTT CTCACCCGGT
GGAAACCAGC AGGGGGGCGG GAACAACGCG TTACGACAGC AACTGGGGCT GGCGGTGGCG
GGAGCTGACG ACGCTTCGAG CAATCTGATC CCACTGCGGT TCAGTGTTGA TACGCGTACC
AACAGTATTA CTGCGATTGG CGGGGCGGAA GCCTTACGTG TCGTGGAAGC CATCCTGCTC
AGGCTCGATG AATCCGATCT GCGCGAACGC AAGAACGTCG TCTTCAAGCT CAAGAACAGC
CCGGCACTCG CTGTTTCCAC AGCAGTGACA CAGTTCGTTA ATTCGCAGTT GCAGCTCTCC
CAGCAGAACC CGAACTTGAT CAGCACGGTC GAACAGCTCG AACGCGAAGT TGTTGTGGTT
CCCGAAACTG GCACCAACAG CCTCCTCATC AGTGCCACAC CGAGGTACTA CGATGAGATC
ACTCGACTGG TCATGGAACT TGATCAGGCA CCACGTCAGG TGATCATTCA GGCTCTGATT
GTGGAAGTGA CACTCGATAA CGTCGATGAG TTTGGTGTCG AACTGGGCCT GCAGGATTCG
GTGCTCTTCG ACCGCAGCGT CGTCGATGAC CTGGTGACTT TGACCGAAAC CACCACTTCG
CCGAACGGTA CACAAACCAC CACACAGCGT GTCGTGTCGC AAACGGCAGC TCCCGGCTTT
CTGTTCAATA ACCCGAATAC ACCTCTCGGG AATAATACGA CGATTAATCC CTCCAGTGTG
GGTTCACAGG GTTTGTCTAG CTTCTCGCTG GGACGTGTGA ATAACGACCT GGGTTATGGT
GGTCTGGTTC TTTCCGCAGG TTCGGAATCG GTCAACGTGC TGATTCGTGC CCTGGCTTCA
CGCCGCCGAT TACAGGTACT CTCGCGACCA CAGATTCGCA CACTGGACAA CCAGCAGGCC
CAGATTCAGG TGGGCCAGCA GGTGCCAATT GTCGACGGTG TGCAGATTGG TGCCACTGGA
TTGGCAAACC CTCAGATTCG TCAGGATCAG GCAGGGATTA TTCTCACGGT CACACCACGA
ATTTCACCTG ATGGGACCAT CGTGATGGAA CTCATCGCCG AAAAGAGCCA GTTCCGTGGG
AACGGTGTCC CCATCTTTAC CGACGCCACC AACGGCAACG TGATCGAATC GCCCATCAAG
GATATCAGTG CTGCTCGAAC TGCGATCAGC GTTCCCAATG GCCAGACCGT TGTCATGGGG
GGCATGATTA CCGCAACGGA TGAAACCAGC GAACGCAAAG TCCCCTTTAT TGGCGATATT
CCCATCGTGG GGCATCTGTT CCGATATGAC AGCAAGAGTC ATGTTCGTAC GGAACTGCTG
ATTTTCCTGA CACCGCGTGT GATTTCTTCA GATGCGGATT CGGAGTTCAT CAAGGATGTC
GAAATGGGCC GACTGCACTT TATTGAGTGC GAAGCCGAAG AAATCCACGG ACCCTTGCGA
GCGATCAATG CTCCTGTGAT GGGCGATCCC GACTGGACGA ACCAGCTCTC GCCGAGTGTG
CCATCAGTCG ACCCGATGCC ACCATCGCCA GGCATCCAAA ATCCACAATC AGGTCCGGCC
CCACAACTCT TGCCGCAACC ACCGATCCCG GATGTTCCCG GGCAGACCAG AAAACAGTTG
AAAGACCCGT CGATCCAACA GGCGAGTGCG ACGGATGAGA TGCAGCCCGA TCCTTATGGC
CATCTCCCAG ACACAGGCGT CATCCAGATC ACTCAACCTT CAGTGGCTGA ATCATCCAAA
GGTTCATCTC CTTCCAAAAA AGGTGAGCCC ACCAAGGCCC AGGATAAGTC GGCCACACCT
CCCAAAAAGT GGTATTCATT CCGTCGATGA
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| Protein sequence | MYAISDRASS HRQYLPHLLS YGSHMLTSIP PGLRAVRTLF PQTQNSVWWG CAQLLLGTAC
TLLSPSEMVY GREPIVPLTN GQQKVSPHHT NSGFGVNAPA VGDQQDAGPR VKLNHWGSNW
QKVFEQLAEE SQSELIMERV PTGRFTRIDK QEYSRADAIR ILNKEIEPLG FRLIEKGKFI
VLMDLPSIRP KYQPVELHTS PYTPAQQLQA QQSQSAYGPP LQTPGMQPAR PVQPLPTGPY
AQVPPGMSAQ HPLSAPYETA PTLHPGQIQQ ISGQQIAGLP SQSPVAPLPV AKTPQNFMPQ
NVVTQNVMTL GHEVPAAANT HPLLQPVAPA AGHPLAASEI KPVPQPVAKP PVAIAFKPRQ
HKAAELAKVL YRSHKENARL VDAGRAGKPA FSVSRLPGKS TTAIEFMVSI DDERDQLYVD
GSEAVARGVV DLLTSLDTKG DWPSDAKIVP TTPQAAIMLA QYQPDLEKMR RQNRLTVAQA
GNTPAANPQR ENDDPFAPAP AQAKPEAAQP PRGNSAISDV VTNLKGDVNI EAIGDLGVLI
LRGNEADVEQ VMKVIRELEA LSENTAPQLH VLYLSHTDSP AMSELLTLVF DSLAKFPGRA
TQPRQNVAII PVDTPNALII VAPKTDLDSI LELAEELDQP TDPESEFEVF SLKTAVASQV
VTNITAFYAT RVGLGARVLA IADPRSNSVI VRARPRDLDQ VKALIAKVDR DEMAAVNQVK
IIPLKNAVAV ELSAVINAAI QSVLSPPSNQ AANQGGANSG LGGNQVAEDF RQVRPAILSF
LAGDKKALRS GMLADIRITP DTRMNSLILS APEQSIPLLE ELIRQLDQPT AAVAEIKVFT
LTNADASQLV TQLQQLFSPG GNQQGGGNNA LRQQLGLAVA GADDASSNLI PLRFSVDTRT
NSITAIGGAE ALRVVEAILL RLDESDLRER KNVVFKLKNS PALAVSTAVT QFVNSQLQLS
QQNPNLISTV EQLEREVVVV PETGTNSLLI SATPRYYDEI TRLVMELDQA PRQVIIQALI
VEVTLDNVDE FGVELGLQDS VLFDRSVVDD LVTLTETTTS PNGTQTTTQR VVSQTAAPGF
LFNNPNTPLG NNTTINPSSV GSQGLSSFSL GRVNNDLGYG GLVLSAGSES VNVLIRALAS
RRRLQVLSRP QIRTLDNQQA QIQVGQQVPI VDGVQIGATG LANPQIRQDQ AGIILTVTPR
ISPDGTIVME LIAEKSQFRG NGVPIFTDAT NGNVIESPIK DISAARTAIS VPNGQTVVMG
GMITATDETS ERKVPFIGDI PIVGHLFRYD SKSHVRTELL IFLTPRVISS DADSEFIKDV
EMGRLHFIEC EAEEIHGPLR AINAPVMGDP DWTNQLSPSV PSVDPMPPSP GIQNPQSGPA
PQLLPQPPIP DVPGQTRKQL KDPSIQQASA TDEMQPDPYG HLPDTGVIQI TQPSVAESSK
GSSPSKKGEP TKAQDKSATP PKKWYSFRR
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