| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3437 |
|---|
| Symbol | |
|---|
| ID | 9140154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 4448208 |
|---|
| End bp | 4449251 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_003631449 |
|---|
| Protein GI | 296123671 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.319469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAATT CTTACCAACT TCTATTGAAC TCTGAGAGCG ACCGTCTCCC TCGGATTGCT
ATAGCCATTA CGTTTGGCCT GAGTCTGTTT TTAGCGATGA ATGCTTCAAC AGCTTTGGCA
GAAACCATCA CCATTCGGGC AGCTCAAATC ACAGTCGCAG AGCAGCTGGA AATTCCGGCT
TTAGAATCAG GCACACTCGT CGAGCGACTT TTTCGCGAAG GCGAAGTCAT CGAAGAAGGT
CAGAAGATCG GCCAGATTGA TGACCAGGTC GCCAGACTGG CGGCTGCCAA AGCCCGTGCC
GAACTGGCCT TAGCCAAGGC ACTGACAGAG AGTGACCTCA AGCTGCGATT TGCCCGCAAG
AACGCCGAAG TCTCGAAAGC CGAACTGACG CGATCACTTG AATCGGTTGC GCGTTATCCG
AAGAGCGTTT CGCAGACCGA ACTCGACCAA TTGGCACTGG CTGCCCAGAA GGCCGAACTC
GAGGTCGAGC AGGCTGAGTT TGATCAGCGG CAACTGGCAC TCCAACAGGA GATTCGCGCA
CAGGAACTGG CAGGAGCCGA GTTAATGGTC GCCCGACGTG AAATCAAATC GCCCCTCTCT
GGCACAGTGG TGAACTGGAA AAAACAGCGC GGCGAATGGG TGGATGCCGG GACACCTGTC
GTGAGAGTTG TGCGATTAAA TCCTTTGCGG ATTGACACCT TTCTGCCATC CAGCCAGGCC
CGACTGTTGC GGATCGGGCA GACAATTCAA TTCCTCCCTG TGGCCGGTAA AAAATCTCCC
ATCGATCCGT CGAAAGAAAC AGGAAATCAG CCTTCCCAAG TGAAAGCACT GGAAGGGAAG
ATCACTTTTA TCAATCCCGA AGTCGATCCT GTCGGTCAAC AGGTGCGGAT CTGGATCGAA
CTTCCCAACC CGGAATTGTC ACTTCGACCC GGCGATCGTG GTGATGTCAC TCTGGAATTA
CCAGAAACTG ACGCGCCAGG AACCCCACTG AAATCCACGA ACACTGGCAA GCCTGCTACG
ATTCCCGGTT TACCACCTCG CTGA
|
|---|
| Protein sequence | MPNSYQLLLN SESDRLPRIA IAITFGLSLF LAMNASTALA ETITIRAAQI TVAEQLEIPA
LESGTLVERL FREGEVIEEG QKIGQIDDQV ARLAAAKARA ELALAKALTE SDLKLRFARK
NAEVSKAELT RSLESVARYP KSVSQTELDQ LALAAQKAEL EVEQAEFDQR QLALQQEIRA
QELAGAELMV ARREIKSPLS GTVVNWKKQR GEWVDAGTPV VRVVRLNPLR IDTFLPSSQA
RLLRIGQTIQ FLPVAGKKSP IDPSKETGNQ PSQVKALEGK ITFINPEVDP VGQQVRIWIE
LPNPELSLRP GDRGDVTLEL PETDAPGTPL KSTNTGKPAT IPGLPPR
|
|---|
| |