Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_3238 |
Symbol | |
ID | 9139953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | + |
Start bp | 4181121 |
End bp | 4183109 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | |
Product | sigma-54 factor interaction domain-containing protein |
Protein accession | YP_003631251 |
Protein GI | 296123473 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0144494 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGCTG GCTGGTTGTC TCGAAATGAG TTTCGTCAGG CCGCTGAGTT CCCTGATCTG CCGGAATTCT CCGTGTGGCA GCAGGAGGTC TTTCAGTTAC TTCCCCGGGC GACGTCCATC GATGCATTCG GGCGGGAGGT CGCGGCACGA CTGGCTGGCC TGCTGGGGGT CAGCTATGTC GCCATCTGGC AAAGATCACC TGCCTGGGCC TCGATGGTTC AATACGGCCG ACTGGCCAAC GACGATCTGC CCCAGAGCCT GATGATCGAA GCACTCGACC GGGATGCAGC GACGATCGGT GTTAAAGCCA GTGGAAGCTG TCTCGTCGCC CCCTTGCCTC AGGAAGATGG GCTCTCTTCA TTGGGGACGG CTGTCCTTGT GATCCACGGT AAGAACCTGC ATGACAAGCA GTTGCCCTCC GCGATGTTCG CAGCTCAAAC GTTCGCGACA GCGCTGGCAG TGTGCCAGAA GACGATCAAG GCACAAGAGC GAGCCGAAAA GCTACGCGAG ATTCTCAAAC TGGCTGCACA ACTGGCCAAT GAGCAACAGA CAGAAAAACT TCTGACAAGA ATTGCCGAGG AAGCGACCCG CCTGCTCGAC TGTGATCGCG CCAGCATTTT CATCTGGGAT CGTGAACATC ACGAAGTGAT TGCCTGCCCT GCACTGGGTG TCGAAGGGGG CTCACTCCGA CTTTCTGACA AAGTGGGTGT CGTGGGAGAA GTCATTGCCA AGGTGCAGTT GATTCGCGTG GACGATGCCT ACGCCGACCC GCGATTTCAT CGCAAAGTCG ATGCTTCCAG TGGCTACAAG ACCAGCAATC TCCTCTGCGG CCCCTTACGC GATCTCGACG GCAAAGTTCT CGGTGCCTTT GAAGTTATTA ATCATCGCCA GGGCCCCTTT TCGCAGGAAG ATGAGATCAC ACTTCTCGAC CTGTGCATTC AGATTGCCGC TGCCCTGCAG AACACCAGAG AACGCGAACT GCTCGTGACA TCGAATCGTC AACTGACCGA GCAGGTCTCG CGTGGGGTCA ACATCGTTGG CGAAAGCCCG GCTATCGTCG CTATGCGGAG CACCATTCGC CGTCTCGCGG GAACCGATCT TCCTGTCCTG ATTCTCGGAG AAAGCGGCAC GGGGAAAGAA GTCGTGGCTT CCTCACTGCA TTACCAGGGA TCGCGGGCTG ACCGGCCGTT TATTGCTGTG AATTGTGCAG CTCTCACGGA AACACTTCTC GAAAGCGAAC TCTTCGGGCA TGAGCGTGGG TCGTTCACGG ATGCCCACGA AATGCGCCGC GGTAAGTTTG AACTCGCGGA AGGGGGAACC ATCTTTCTCG ATGAAATTGG TGATCTGAGT GCGGGTGGTC AGGCCAAACT CTTGCGTGTT CTGGAGCAGA AAGTGATCAC ACGCGTGGGT GGTTCGCAGA CGATTCCGAT TAATGCGCGT GTCATTGCCG CCACGAATGC CCGGTTGGCC GAAGCTGTGC GTGCAAAGAA GTTTCGCGAA GACCTCTACT TCCGCTTAAA TGTTGTCACA TTAGAAATCC CGCCGTTGCG TGAGCGAGCG GACGATGTTC TGCCTTTGGC CGAGTACTTT CTCGAACAGT TTGCGGTGCA GGCCCGCCGC GGGAAGATGC ATCTTTCGGC TGAAGCCAGG CGCCGCCTGC AATCGCATGC CTGGCCCGGC AACGTGCGTG AGCTGCGGAA TCTGATGGAA CGCGTGGCCT TTCTGGCACC GGCTGAGCGG ATTGAAGTCG AAGATCTGGC CTTCATTCTC AGCCCTGAGC GCGACAGTTT TCATGAGCCC TCGCTCGATA TGGGTCTCAG TGAGGCGACG AACTCCTTTC AGCAGGAATA CATCCGCCGG GCGATCAAGC GGGTGCGCAA CAACATGAGC GAAGCGGCGA GGCTATTAGG CCTGCACCGC TCGAATCTTT ACCGCAAAAT GCGGCAGCTC GATATGGCGG AAGCGGGGGA TGGGGAAGAG GAAGAGTAA
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Protein sequence | MAAGWLSRNE FRQAAEFPDL PEFSVWQQEV FQLLPRATSI DAFGREVAAR LAGLLGVSYV AIWQRSPAWA SMVQYGRLAN DDLPQSLMIE ALDRDAATIG VKASGSCLVA PLPQEDGLSS LGTAVLVIHG KNLHDKQLPS AMFAAQTFAT ALAVCQKTIK AQERAEKLRE ILKLAAQLAN EQQTEKLLTR IAEEATRLLD CDRASIFIWD REHHEVIACP ALGVEGGSLR LSDKVGVVGE VIAKVQLIRV DDAYADPRFH RKVDASSGYK TSNLLCGPLR DLDGKVLGAF EVINHRQGPF SQEDEITLLD LCIQIAAALQ NTRERELLVT SNRQLTEQVS RGVNIVGESP AIVAMRSTIR RLAGTDLPVL ILGESGTGKE VVASSLHYQG SRADRPFIAV NCAALTETLL ESELFGHERG SFTDAHEMRR GKFELAEGGT IFLDEIGDLS AGGQAKLLRV LEQKVITRVG GSQTIPINAR VIAATNARLA EAVRAKKFRE DLYFRLNVVT LEIPPLRERA DDVLPLAEYF LEQFAVQARR GKMHLSAEAR RRLQSHAWPG NVRELRNLME RVAFLAPAER IEVEDLAFIL SPERDSFHEP SLDMGLSEAT NSFQQEYIRR AIKRVRNNMS EAARLLGLHR SNLYRKMRQL DMAEAGDGEE EE
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