Gene Plim_3067 details

Gene Information

• Locus tag: Plim_3067
• ID: 9139779
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 3965995
• End bp: 3972006
• Gene Length: 6012 bp
• Protein Length: 2003 aa
• Translation table: 11
• GC content: 58%
• Product: YD repeat protein
• Protein accession: YP_003631085
• Protein GI: 296123307

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCACAG AACCCTTCGT CAGTGACGTT TCCATTACTA CAGGCAACTC CGAGCACTGC 
TCCGCGCCCG ATACGGCTCA AGCTCCCGGC TGTAGCTGCG AATGTCCGCC CACTTGCCCG 
GCGAAAACCG AGCCCAAATC CACCACCGAC CAGTCCATCC GCTACTCCAC GGGCGAAATC 
TCCTACCGCG TGAACGATCT TCCTTCGCTG ACAGCCGGTG GTATTCCCTG GGGACACAGC 
CGCAGCTTCA CGCCGCAGCT CGAATTCGAT CAGAACGTTG GCCAGGGCTG GAACTGGCAC 
GTCGCCCATG TCCCTTACCT GATTCTCCGC GACACTGAAG TCATCGTCAT GGGCCGCGGC 
CTCGCCGAAC TCTGGTTCGA CCGCGATGAA AACACCTTTG CGCCTCGTTT CGGCATCAAG 
CAGCAACTCA CCTACAACGC CACCACTCAA AACTACACGC TCCGTTCTGT CGATGGCGAT 
CTCCAGATCT TCGACAATGA AGGTCTCTTC CTCCGCCAGG TTGATCCCGC AGGGAATCAA 
CTCGTTGTCG AAGCTCTGCT CACAGGCACT CAACTCCCCG CCTCGATCAA ACGTGTCACC 
GGCGATGTCA CCGAGCAATA CGCCTACAGC TACACCTCGG GCGGCCCCGC AGGTTCACTT 
CTCACCGAAG TCGTCCTTCG CCGCAAAGTC GGTTCCGGCA GTTGGCAAAA TGTCGCCTCT 
GCTATTTACA CCTATTACGC CAGTGGCAAT CCCTTTGGCG ATACCGACGA CCTGCAGACA 
GTCACCACTC GTTCCTGGCA GAACAACGCC TGGCAAGACA CCGGCACGAC TCTTTATCGC 
TATTACCTGC CGCAAGCAGC TTCTTCGGGA AGTAGCGGTG CCATTCCCGC CCAGCGTGGC 
CATCTCCTCC GCTATGTCGT CAAACCTTCT TCGTTCGACC GCCTCGCTGC CGATCCCGCA 
GTCAGCGATC CGCTCACCGC TGCCAACAGT CTCGTCGCCC TCTATGCCGA TTACTACTTC 
GAGTTCGATG AAGCCCGCCG CGCGACCCGT GAAGTCCGCT CCAGTGGCTC GCAGATCTTT 
GATTACGAAT ACACCACCAG CAGCTTCTCA GCCGCCCACA ACCACTGGCA CACGAAAACC 
GTCGAAACCC GGCCCGATGG CTCACGCCAC GTCGTCTTCA CGAATGCCGA TGGTCGCGTC 
CTGCTGAAAT CGCTCGAAAC CGGTGTCAGC CCCGCCCTCG AAGAGTGGAT CGATTACTAT 
CGCTACAACT CGAATGGCTA CGTCGAATTC CACGCCCATC CCGATGCCGT CATCGGCTAC 
GACGAAGAGC TGCCTGATCT CGTCGAATAC TCTCCCTCCA CCAACACTGC CACCTATCTC 
TACAACAACA CCGGCCTCAT CGAACGCTAC ACCTACCACG CTCCCACCGC CTGGCTCACC 
AGCGAATCGG TGCAGGAAGG TCTCGCAGGT ACGCCGCGTG TCGTTCGCGA AATGGAATAC 
ATTCCCTGCT GCCACGGCAG CACTTCCAGC AGCAGTTCCT CCGGTTCCAG CAGCAGTGGT 
GGAGGTAGTA GCTCAAGTAG CGAACCCTGC CGCTACTTCC TCTCCCAGGA AACTCTCTAT 
CGCGACGAAA ACGCCACCAC CGCCGCCATC ACCACTTACG ACTACACGTT CTACGAGGGA 
ACCTGCGCCA TCCACGAACG CGTCACCACC CTCCCGCTCG TCTCTCTCGT CGAACACGGC 
TCTGGCGTTA ACAACACCCG CCGCGAAGTC TACGACCTCT ACGGACGCCT CACCTGGAGT 
CGCGACGAAC GCGGCGTCAT CACCCACTTC GTCTACGATG AACTCACCGG CTCCCTCATC 
CAGCGGATCG CCGACGCCGA CACCGCGCTC CTCACCGGCG TCCCCACAGC TCTATCGTCT 
CTCTGGGAAA CTCTCCCGCA GTTCGGCCTC CACGCGATCA CCGATTTCAC GGTCGATCCC 
CAGGGCCGCA CAATCCAATC TCTCGGCCCC GTCCACAACA TCGACCTCGC CGGAACGGCA 
ACAGCGGTCC GCACCGCCTC CTGGATGCTC TACGACGACG CCAACCACAC CTCCTACAGC 
GCCCAGGGCT ACATCAAGAC CAGCGATTCC TCCGCGACAC TCGTCAACCC CATCTCGATC 
ACCATTGCCG ATAGTGCCGG AAAGACTCTC GTCTCGGCTC ACGCCACCCT CTCCAGCACT 
GCAGGCGATC TCGCCACCTG CCTGAGCACC CACGGTGCCG TGACCCAGGC CGATTACACC 
CGCCTCAGCA CCTTCCAGTA CACCGAGTGC TGCCTCGCTG CCTCTCAGCG GGCCTATCAC 
ACCATCCCCA CCACCGGCGA AGGCAGCCCC GGCACCCACT ACGACCAGAC CTCCTTCGGC 
TACGACGCCC TCAAACGCCG TGTCCGCACG GTCTCTCCCG GCGGCACCAT CTCCGCAGTC 
GTTCTCGATC CCCGCGGTCT CACCTTATCA ACCTACATCG GCACCAACGA TACCGGCGCC 
ACCGAACAGG ATCCCACCGG CGCCACGGCT CCCGGCGGCA GCCATCCCTC GAACAACATG 
GTTCTCGTCT CCGCAGCCGA GTACGACATC GCGGGCCGCC CGATTCTCTC GACACAACAC 
GTCGATAGCA GCACCACACG GGAAACCAGC TATAGCTACG ATTACCGTGG CCGCCGCCTC 
GTCACCCACG GCGAAGAAAA CTTCTGCCAG AAAGAAACCT ACGACTTCCG CGGCCAGCTC 
ATCCGCAGCG AACGCTACGA CGGCTCTCCC ACCGGCACAC TCTTAAGCCG CAGCGAGACC 
GATTACGACG CCCTCGGCCG CCCCTACCAA TCCCGCCGCT ACGCCGTCAA CCCCTCCACT 
GGTAGCGTGG GGAACGCCCT CATCGACCGC ACCTGGTACG ACGCCTCCGG CCAGGTCGTC 
AAATCCCTCC CCTCCGGCTC GAAACTCTTC ACCAAGAGCC AGTTCGATGG CCTGGGCCGC 
ACTGTCGCCA CCTTCGCTGC CTACGATCTC GATGAATCGG CCTATGCCGA CGCCTTCGAC 
CTCTCCGACG ACATCGTCAT CGAATCCTCC CACACCACCT TCGACCTGGC GGGCCACGCC 
CTCTCCAGCA CCTCGAAGCA GCGTTACCAC ACCGCCGACG ACACCGAACC CGGCGAACTC 
GGCCACCCCA CCAGCACCAC CCAGCCCCAG GCACGCGTCA CCCATCAAGC CCTCTGGCAC 
GATGGCATCG GCCGCACTCT CGCCACCGCC AACTACGGCA CCAACGGCGG CTCAGCATTT 
ACTCGGCCTG CACTCATTCC TGCTCGTTCT GATACTATCC TTGTCAGTAG CCAAACTTAC 
GACGAAGCGG GCAACCTGTT CGAAACCACC GATCCCGCTG ATATGACCAC ACGCTTCATC 
TACGATGATG CCGGTCGCCG CACGCAGGCC ATCGAAAACT ATGTCGCTTC ACCTGTGGGG 
AGTGATGAAA ACCGCACCAC GAATATGACT TACAGTGCCG ATGGTCAACT CGCCACACTG 
GTTGCGGTGA ATGCTTCCAC AGGGAATCAA ACCACCACCT ACACCTACGG CACTACGCTG 
GCAGATTCCG AAATCGCCGC CAGCAGCCTG CTGCGCTCGG TCGCTTATCC CGATTCCACC 
GGCAGCAGCG ATGAGGTCTT TCTGACATAT AACCGTCAGG GCCAGCGGCT GTCACTCACC 
GATCAGATCG GCACTGTCCA CCACTACGAA TACGATGGAC TGGGACGTTT GACGGAAGAT 
CAAGTCGCCA CCCTGGGCAC AGGTGTCGAT GGTGCGATAC GTCGTCTGGC GACGACCTAT 
GACGAACGCG GGCTGGTGCA TCAATTGACC AGTTTCGATG CCGCCACCTC AGGAAATGCT 
GTTAATCAGG TGCAGTTCAA GTACAATGAC TTCGGGCAGT CGATCCAGAC GTTCCAGGAG 
CATGGCGGCA CCGTGAATAC CGGCACTTCA CCCAGCGTGC AGCGAGGTTA CGCCAACGGC 
AGCACAAATA CAGTGCGCCC ACTGAGCCTC ACCTACCCCA ACGGCCGGGA ACTCACCTAC 
GACTACGGCA CCACCCACGA AATCAACGAT GCCCTCAGCC GCATTGGCTC GATTGTGGAT 
GATGACACGA CCCACCTGGC CGATTACGAG TTCCTCGGCC TGGCAGGCGT CATCCAGCAG 
ACCAGCCCCC AACCCAATCT ACGGTACACG CTGGCGGGAG GTTCCAACGA TCCTGACACT 
GGAGACATCT ACACCGGCCT GGATCGTTTG GGCCGGGTGA AGGACTCCCG CTGGTACAGC 
ACCTCCACCA ACGACGACCT CTCCCGCATC CAGTACGGCT ACGACAGAGC CTCGAACCGC 
ATCTGGCGGA AGAACCCCAT CGCCACGGCC AACAGTGCCG AATACGACTG GCTCTACACC 
TACGACGGCC TCCAACGCCT GAAAACCGCC AACCGCGGCA CACTCAACGG CACCCAAACC 
GCCCTCACCT CCACCGCGTT CAAGCAGGAC TGGAATCTCG ACCCCACCGG CAACTGGGAA 
GGATTCAAGC AGAGTGACAA CGGTTCCACC TGGAGCATGG AACAGGAACG CACCGCCAAC 
CCGGTCAATG AAATCACCGA CATCACCAAC ACGGTGGGAA GTGCCTGGGC CGACCCGGCC 
TACAACGCTG TCGGCAACAT GACCACCATC CCCAAACCCA AGCAGATGGA CGAAGCCTAC 
ACGGCCACCT ACGACGCCTG GAACCGGCTC GTCAAACTGG AAGAAGAAGT CTCCAGCACT 
TTGGAAACCG TCGCCGAGTA CCATTACGAC GCGCGGAACT TCCGAGTGGC TGTCAAAACC 
TACAACTCCG GAGTGCTGGA CGAAACCACC CACGCCTACT TCACAGATGG TTGGCGAAAC 
ATCGAGGAAC GGATCGACTC CAATTCGACA CCCTCCCAAC ACCACATCTG GGGCCTGAGA 
TACATCGACG ACCTCATCCT CCGCGACCGC ACCACCGCTT CCACATTGGA CGAACGCCTC 
TACGCCCTCC AAGACGCCAA CTGGAACGTG ACGGCGGTCG CAGGCGAAGG CGGCGACCCT 
CAGGAACGCA TTGAGTATGA CGCTTATGGA GTGGCAACCG TTAATTCACC ATATTTCGAC 
AGCCTTTCAG CCAGCGACTT CAATTGGGAA ACAACGTGCT GCGGATATTG GCACGATCTA 
CGCACTGGAC TGAGTGCCAT ACGACACCGA TTTTACTTTC ACGGACTCGG GCAATGGACT 
TCTCGTGATC CACTGGGTAG CCTTGCGGGT TCGCATTTGT ACCAGTACGC ATTATCAATG 
CCGACTAGTT TTTCCGACCC TTTTGGACTT CAAGAGGAAA GTTCACATGA GGATTGGATG 
GCCGAGTGGG TGCTACGCAA TCCCAAATGG GATAAAGGCC TAAGCCCTCG CAAGAAAGAA 
TTAGTTAACC AATACTTGAC TTCCACCGTA AGGCGAGGCT GTGTCGGACT TACTTGTGTA 
GAACTTGGAA TTAAAGAAGG CAAAGGGGAC AAAACATGGC CAGATATGAG AAATTGCTAC 
GCCACTCTAT CCGAAGCGAA GGATAGAAAG AACGTAATGG AGGAACAAAA TATCTGCAAA 
GGAAAAAACT GCAATCACGA GAAAGCAAGG CCTAGAATTT ACTCGATCCA TTTCTGGAAC 
AATCGGGGAA AGAACAGAAC GAAGCCTGAC GCCAGTAAGA ACTCTTCGAC TGGTAAGATT 
GATCTTTCTA ACTGGGATCG AGTGAGAAGG CCTCAACTAC CTGGAGATTC TAACTGGGTC 
AATTTTGACT ATGGATATCT TAACGATGAC GGCATGATGG TACACGCTGA TCACGAACAC 
CGACCTGATC TCCCAGGGGT CGGGCCGATG ACAGTGCTAA CGAGCTCCGT CGAAGACTGG 
ATGGTAAATA ATACGGACTT TAATTACGAG GTGTGGTGTG TCGCATGTGA AACTAACGAG 
GCAATAAAAT GA 

 

Protein sequence

MSTEPFVSDV SITTGNSEHC SAPDTAQAPG CSCECPPTCP AKTEPKSTTD QSIRYSTGEI 
SYRVNDLPSL TAGGIPWGHS RSFTPQLEFD QNVGQGWNWH VAHVPYLILR DTEVIVMGRG 
LAELWFDRDE NTFAPRFGIK QQLTYNATTQ NYTLRSVDGD LQIFDNEGLF LRQVDPAGNQ 
LVVEALLTGT QLPASIKRVT GDVTEQYAYS YTSGGPAGSL LTEVVLRRKV GSGSWQNVAS 
AIYTYYASGN PFGDTDDLQT VTTRSWQNNA WQDTGTTLYR YYLPQAASSG SSGAIPAQRG 
HLLRYVVKPS SFDRLAADPA VSDPLTAANS LVALYADYYF EFDEARRATR EVRSSGSQIF 
DYEYTTSSFS AAHNHWHTKT VETRPDGSRH VVFTNADGRV LLKSLETGVS PALEEWIDYY 
RYNSNGYVEF HAHPDAVIGY DEELPDLVEY SPSTNTATYL YNNTGLIERY TYHAPTAWLT 
SESVQEGLAG TPRVVREMEY IPCCHGSTSS SSSSGSSSSG GGSSSSSEPC RYFLSQETLY 
RDENATTAAI TTYDYTFYEG TCAIHERVTT LPLVSLVEHG SGVNNTRREV YDLYGRLTWS 
RDERGVITHF VYDELTGSLI QRIADADTAL LTGVPTALSS LWETLPQFGL HAITDFTVDP 
QGRTIQSLGP VHNIDLAGTA TAVRTASWML YDDANHTSYS AQGYIKTSDS SATLVNPISI 
TIADSAGKTL VSAHATLSST AGDLATCLST HGAVTQADYT RLSTFQYTEC CLAASQRAYH 
TIPTTGEGSP GTHYDQTSFG YDALKRRVRT VSPGGTISAV VLDPRGLTLS TYIGTNDTGA 
TEQDPTGATA PGGSHPSNNM VLVSAAEYDI AGRPILSTQH VDSSTTRETS YSYDYRGRRL 
VTHGEENFCQ KETYDFRGQL IRSERYDGSP TGTLLSRSET DYDALGRPYQ SRRYAVNPST 
GSVGNALIDR TWYDASGQVV KSLPSGSKLF TKSQFDGLGR TVATFAAYDL DESAYADAFD 
LSDDIVIESS HTTFDLAGHA LSSTSKQRYH TADDTEPGEL GHPTSTTQPQ ARVTHQALWH 
DGIGRTLATA NYGTNGGSAF TRPALIPARS DTILVSSQTY DEAGNLFETT DPADMTTRFI 
YDDAGRRTQA IENYVASPVG SDENRTTNMT YSADGQLATL VAVNASTGNQ TTTYTYGTTL 
ADSEIAASSL LRSVAYPDST GSSDEVFLTY NRQGQRLSLT DQIGTVHHYE YDGLGRLTED 
QVATLGTGVD GAIRRLATTY DERGLVHQLT SFDAATSGNA VNQVQFKYND FGQSIQTFQE 
HGGTVNTGTS PSVQRGYANG STNTVRPLSL TYPNGRELTY DYGTTHEIND ALSRIGSIVD 
DDTTHLADYE FLGLAGVIQQ TSPQPNLRYT LAGGSNDPDT GDIYTGLDRL GRVKDSRWYS 
TSTNDDLSRI QYGYDRASNR IWRKNPIATA NSAEYDWLYT YDGLQRLKTA NRGTLNGTQT 
ALTSTAFKQD WNLDPTGNWE GFKQSDNGST WSMEQERTAN PVNEITDITN TVGSAWADPA 
YNAVGNMTTI PKPKQMDEAY TATYDAWNRL VKLEEEVSST LETVAEYHYD ARNFRVAVKT 
YNSGVLDETT HAYFTDGWRN IEERIDSNST PSQHHIWGLR YIDDLILRDR TTASTLDERL 
YALQDANWNV TAVAGEGGDP QERIEYDAYG VATVNSPYFD SLSASDFNWE TTCCGYWHDL 
RTGLSAIRHR FYFHGLGQWT SRDPLGSLAG SHLYQYALSM PTSFSDPFGL QEESSHEDWM 
AEWVLRNPKW DKGLSPRKKE LVNQYLTSTV RRGCVGLTCV ELGIKEGKGD KTWPDMRNCY 
ATLSEAKDRK NVMEEQNICK GKNCNHEKAR PRIYSIHFWN NRGKNRTKPD ASKNSSTGKI 
DLSNWDRVRR PQLPGDSNWV NFDYGYLNDD GMMVHADHEH RPDLPGVGPM TVLTSSVEDW 
MVNNTDFNYE VWCVACETNE AIK