Gene Plim_3063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_3063 
Symbol 
ID9139775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand- 
Start bp3961539 
End bp3962246 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content46% 
IMG OID 
ProductHelix-turn-helix type 11 domain protein 
Protein accessionYP_003631081 
Protein GI296123303 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0842494 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACAGA ACAGCGGAAC CAAAGAACGT CTTCAAAGAC TGATCAAGCT GGTCGTTTTG 
TTGCAGACGG GACGTCGAAG ATGCGTTGCC GATCTTTCTG TAGACCTTGA GGTCAGCAGA 
AGGACAATTT TTCGAGATAT CGCACTGCTC CGTGATGCTG GATTGCCAAT CGTGCATCAA 
ACGGAAAATG GCGGTATCTG GTTGATGAAA TCTCGGTTCA AATTGCCAAG AATTCGGCCT 
GAAGATACCG CCATGCTGTT AATGGCCGTT TTGTCATCAA ATTTGCAATC TCTACCAGCC 
GTCAAACAAC TGACGGATGC ATTTGTAGCA GAAGTTCTTG AAGGACTCTC AACGAACCAT 
AAGGAGTTCA TGCTCCGTGT AATGCAGGCA ATTCAGTTTG AACCACCTGC CAAAGATGTT 
TCCATACATG GCTGTCTGGC CTCTCTGGTA AAATCTATCG AAACACGAAA GAAAGCACGG 
CTTTGGGTCT GCTCACAAAA TCAGAGTGGC AGTTGGTCAA CACTTTCCGC ACCACTTTGG 
CTTGAGCTGA GTACTCAAAA CTGGAAGGTT TTCGCACACT CATCTTTGCA TCAGAAAGTT 
TGCGGTTTTC ACATCGAGAA TCTTGAACGC GTTCAACTAT TAGACGAAGA TTTCGATCCC 
CAGACCATCC GGCGACCTCG TGATCAGGAA GCTATTCCCA TCTACTAA
 
Protein sequence
MTQNSGTKER LQRLIKLVVL LQTGRRRCVA DLSVDLEVSR RTIFRDIALL RDAGLPIVHQ 
TENGGIWLMK SRFKLPRIRP EDTAMLLMAV LSSNLQSLPA VKQLTDAFVA EVLEGLSTNH 
KEFMLRVMQA IQFEPPAKDV SIHGCLASLV KSIETRKKAR LWVCSQNQSG SWSTLSAPLW 
LELSTQNWKV FAHSSLHQKV CGFHIENLER VQLLDEDFDP QTIRRPRDQE AIPIY